View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_163 (Length: 255)
Name: NF9361A_low_163
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_163 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 45 - 255
Target Start/End: Complemental strand, 2443118 - 2442908
Alignment:
| Q |
45 |
agtccatggatcataatttatatttcgttgcannnnnnnatgtctcgaacaaattgattacctcttagatttacatgtacgtgttttattggatctaaag |
144 |
Q |
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| T |
2443118 |
agtccatggatcataatttatacttcgttgcatttttttatgtctcgaacaaattgattacctctaagatttacatgtacgtgttttattggatctaaag |
2443019 |
T |
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| Q |
145 |
tttctcacaaatgaattggataattctataaacaatcatgggctacacttgatttgtatatgggaaaaataacccacaaaataattggaataaattatta |
244 |
Q |
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| T |
2443018 |
tttctcacaaatgaattggataattctataaacaatcatgggctacacttgatttgtatatgggaaaaataacccacaaaataattggaataaattatta |
2442919 |
T |
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| Q |
245 |
caaaaatatgt |
255 |
Q |
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| T |
2442918 |
caaaaatatgt |
2442908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 2444081 - 2444045
Alignment:
| Q |
16 |
atcatagaggcatggaagaggccacaacaagtccatg |
52 |
Q |
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| T |
2444081 |
atcatagaggcatggaagaggccacaacaagtccatg |
2444045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 50983929 - 50984152
Alignment:
| Q |
28 |
tggaagaggccacaacaagtccatggatcataatttatatttcgttgcannnnnnn-atgtctcgaacaaattgattacctcttagatttacatgtacgt |
126 |
Q |
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| T |
50983929 |
tggaagaggccacaacaagtccagggatcacaatttacatttcgttgcattttttttatgtctcgaaaaaattgatttattcttgggtttaccagtatgt |
50984028 |
T |
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| Q |
127 |
gttttattggatctaaagtttctcacaaatgaattggataattctataaacaatcatggg-ctacacttgatttgtatatgggaaaaataacccacaaaa |
225 |
Q |
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| T |
50984029 |
gttttattggatctaaagtttctcgcaattagat-ggataattctataaacaatcatggggctacacttgatctgtttatgggaaaaataacccac-aaa |
50984126 |
T |
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| Q |
226 |
taattggaataaattattacaaaaat |
251 |
Q |
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| T |
50984127 |
taattggagtaaattattgcaaaaat |
50984152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 34019696 - 34019752
Alignment:
| Q |
127 |
gttttattggatctaaagtttctcacaaatgaattggataattctataaacaatcatggg |
186 |
Q |
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| T |
34019696 |
gttttattggatc--aagtttctcacaattggat-ggataatactataaacaatcatggg |
34019752 |
T |
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