View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9361A_low_167 (Length: 251)
Name: NF9361A_low_167
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_167 |
 | |
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| [»] scaffold0300 (1 HSPs) |
| | |
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| [»] scaffold0140 (1 HSPs) |
| | |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 3437321 - 3437088
Alignment:
| Q |
1 |
ggatgtaggccatttattggggttgatggctgtcatctaaagacgaagtatgggggtcaactactcattgctgttggtagagacccaaatgacgagtact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
3437321 |
ggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatggtggtcaactgctcattgctgttggtagagacccaaatgaccagtact |
3437222 |
T |
|
| Q |
101 |
ttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3437221 |
ttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgt |
3437122 |
T |
|
| Q |
201 |
attcatatcagatcagcagaaggtaagtgatgtc |
234 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
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|
| T |
3437121 |
attcatatcagatcagcagaaggtaagtgttgtc |
3437088 |
T |
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Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 46240158 - 46240383
Alignment:
| Q |
1 |
ggatgtaggccatttattggggttgatggctgtcatctaaagacgaagtatgggggtcaactactcattgctgttggtagagacccaaatgacgagtact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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|
| T |
46240158 |
ggatgtaggccatttattggggttgatggttgtcatctaaagacaaagtatgggggtcaactgctcattgctgttggtagagacccaaatgaccagtact |
46240257 |
T |
|
| Q |
101 |
ttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46240258 |
ttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgt |
46240357 |
T |
|
| Q |
201 |
attcatatcagatcagcagaaggtaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
46240358 |
attcatatcagatcagcagaaggtaa |
46240383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 23541555 - 23541775
Alignment:
| Q |
4 |
tgtaggccatttattggggttgatggctgtcatctaaagacgaagtatgggggtcaactactcattgctgttggtagagacccaaatgacgagtactttc |
103 |
Q |
| |
|
||||| |||||| ||||||| ||||| |||||| ||||||| ||||||||||||||||| || || | ||||||||| |||||||||||| | || |||| |
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|
| T |
23541555 |
tgtagaccatttgttggggtagatggatgtcatttaaagacaaagtatgggggtcaacttctaatagttgttggtagggacccaaatgaccaatattttc |
23541654 |
T |
|
| Q |
104 |
ctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtatt |
203 |
Q |
| |
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| | |||||||| || || ||||| |||| |||| ||||||||| |||||||||||| | | ||||||||||||| | |||| |||||||| || |
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| T |
23541655 |
cattggcatttggaatagtagaaacaaagtgtagggaaagctggaaatggttcatggagcttttaatggatgacattggaagggataggagatatgtctt |
23541754 |
T |
|
| Q |
204 |
catatcagatcagcagaaggt |
224 |
Q |
| |
|
|||||||||||| |||||||| |
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|
| T |
23541755 |
catatcagatcaacagaaggt |
23541775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 30038307 - 30038134
Alignment:
| Q |
52 |
gggggtcaactactcattgctgttggtagagacccaaatgacgagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagt |
151 |
Q |
| |
|
||||||||||| | |||||||| || ||||||||||||||| |||| ||||| || || ||||| | |||||||||||||||| || || ||||| | |
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|
| T |
30038307 |
gggggtcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaacttggaaat |
30038208 |
T |
|
| Q |
152 |
ggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
225 |
Q |
| |
|
|||||| | |||||||| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
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|
| T |
30038207 |
ggttcacgcagttgctgatggaagatataggtgaagataagagatatgtgttcatatcagatcaacaaaaggta |
30038134 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 225
Target Start/End: Original strand, 29878233 - 29878409
Alignment:
| Q |
49 |
tatgggggtcaactactcattgctgttggtagagacccaaatgacgagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga |
148 |
Q |
| |
|
|||||||| ||||| | |||||||| || ||||||||||||||| |||| ||||| || || ||||| | |||||||||||||||| || ||| |||| |
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|
| T |
29878233 |
tatggggggcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga |
29878332 |
T |
|
| Q |
149 |
agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
225 |
Q |
| |
|
| |||||||| |||||||| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
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|
| T |
29878333 |
aatggttcatacagttgctgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta |
29878409 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 225
Target Start/End: Complemental strand, 3921357 - 3921199
Alignment:
| Q |
67 |
attgctgttggtagagacccaaatgacgagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgc |
166 |
Q |
| |
|
|||||||| || ||||||||||||||| |||| ||||| || || ||||| | |||||||||||||||| || ||| ||||| |||||||| |||||| |
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|
| T |
3921357 |
attgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttggaaatggttcatacagttgc |
3921258 |
T |
|
| Q |
167 |
tgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
225 |
Q |
| |
|
|| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
|
|
| T |
3921257 |
tgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta |
3921199 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 225
Target Start/End: Original strand, 6869027 - 6869201
Alignment:
| Q |
49 |
tatgggggtcaactactcattgctgttggtagagacccaaatgacgagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga |
148 |
Q |
| |
|
|||||||| ||||| | |||||||| || ||||||||||||||| |||||||||| || || ||||| | |||||||||||||||| || ||| |||| |
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|
| T |
6869027 |
tatgggggccaactgttgattgctgtagggagagacccaaatgaccagtactttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga |
6869126 |
T |
|
| Q |
149 |
agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
225 |
Q |
| |
|
| ||||||||| |||||||| |||| || || || ||||| |||| |||| |||||||||||||| || |||||| |
|
|
| T |
6869127 |
aatggttcatgcagttgctgatggaagatataggtcaagat--aagagatgtgttcatatcagatcaacaaaaggta |
6869201 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 225
Target Start/End: Complemental strand, 4497377 - 4497222
Alignment:
| Q |
70 |
gctgttggtagagacccaaatgacgagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt |
169 |
Q |
| |
|
|||||||| || ||||| |||||| |||| ||||| || || ||||| |||||||| ||| | | |||||||||||| ||||| |||||| || || |
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|
| T |
4497377 |
gctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagttgaaagtaaggcaagctggaaatggtttatggagctgttga |
4497278 |
T |
|
| Q |
170 |
tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
225 |
Q |
| |
|
|| ||||||| || || |||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
4497277 |
tgaatgacataggaaatgataaaagatatgtcttcatatcagatcaacagaaggta |
4497222 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 11318404 - 11318315
Alignment:
| Q |
3 |
atgtaggccatttattggggttgatggctgtcatctaaagacgaagtatgggggtcaactactcattgctgttggtagagacccaaatga |
92 |
Q |
| |
|
|||||| || ||||| || |||||||| |||||||||||||| | ||||| || ||||| || ||||| |||| |||||||||||||| |
|
|
| T |
11318404 |
atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttgcaagagacccaaatga |
11318315 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 18202 - 18289
Alignment:
| Q |
138 |
ggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
225 |
Q |
| |
|
|||||||||||| ||||| |||||| || || || ||||||| || || || ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
18202 |
ggcaagctggaaatggtttatggagctgttgatgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta |
18289 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 24676129 - 24676042
Alignment:
| Q |
138 |
ggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
225 |
Q |
| |
|
|||||||||||| ||||| |||||| || || || ||||||| || || || ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
24676129 |
ggcaagctggaaatggtttatggagctgttgatgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta |
24676042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 36915336 - 36915439
Alignment:
| Q |
122 |
ttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaa |
221 |
Q |
| |
|
||||||||||||||| || ||| ||||| ||||||||| ||||||| |||| || || || ||||||| |||||||| |||||||||||||| || || |
|
|
| T |
36915336 |
ttgaaactgagtgcaaggaaagttggaaatggttcatgcagttgctaatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaa |
36915435 |
T |
|
| Q |
222 |
ggta |
225 |
Q |
| |
|
|||| |
|
|
| T |
36915436 |
ggta |
36915439 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 40153 - 40053
Alignment:
| Q |
4 |
tgtaggccatttattggggttgatggctgtcatctaaagacgaagtatgggggtcaactactcattgctgttggtagagacccaaatgacgagtactttc |
103 |
Q |
| |
|
|||||||| ||||| || |||||||| |||||||| ||||| |||||||| ||| || | |||| |||||||||||||||||||||| |||| |||| |
|
|
| T |
40153 |
tgtaggccctttataggagttgatgggtgtcatcttaagaccaagtatggaggtactcttttaattgttgttggtagagacccaaatgaccagtattttc |
40054 |
T |
|
| Q |
104 |
c |
104 |
Q |
| |
|
| |
|
|
| T |
40053 |
c |
40053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 43494 - 43583
Alignment:
| Q |
3 |
atgtaggccatttattggggttgatggctgtcatctaaagacgaagtatgggggtcaactactcattgctgttggtagagacccaaatga |
92 |
Q |
| |
|
|||||| || ||||| || |||||||| |||||||||||||| | ||||| || ||||| || ||||| ||||| |||| ||||||||| |
|
|
| T |
43494 |
atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatga |
43583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 18131674 - 18131585
Alignment:
| Q |
3 |
atgtaggccatttattggggttgatggctgtcatctaaagacgaagtatgggggtcaactactcattgctgttggtagagacccaaatga |
92 |
Q |
| |
|
|||||| || ||||| || |||||||| |||||||||||||| | ||||| || ||||| || ||||| ||||| |||| ||||||||| |
|
|
| T |
18131674 |
atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatga |
18131585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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