View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361A_low_173 (Length: 250)

Name: NF9361A_low_173
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361A_low_173
NF9361A_low_173
[»] chr3 (3 HSPs)
chr3 (16-240)||(53984800-53985024)
chr3 (19-240)||(53971095-53971315)
chr3 (24-80)||(53071908-53071964)
[»] chr4 (1 HSPs)
chr4 (19-80)||(34036297-34036358)
[»] chr2 (1 HSPs)
chr2 (16-80)||(6688093-6688157)
[»] chr1 (1 HSPs)
chr1 (19-79)||(16163998-16164058)
[»] chr7 (3 HSPs)
chr7 (39-80)||(19935380-19935421)
chr7 (39-80)||(19966519-19966560)
chr7 (33-80)||(31014482-31014529)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 53985024 - 53984800
Alignment:
Q  16 gaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaagatatgataaggataatttgacgatttaattta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53985024 gaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaagatatgataaggataatttgacgatttaattta 53984925  T
Q  116 atttggtagatctacctctacacacgtcttaatactccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaa 215  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53984924 atttggtaaatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaa 53984825  T
Q  216 atattccgacgtgcatttcatctca 240  Q
    |||||||||||||||||||||||||    
T  53984824 atattccgacgtgcatttcatctca 53984800  T

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Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 53971315 - 53971095
Alignment:
Q  19 gtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaaga-tatgataaggataatttgacgatttaatttaat 117  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||| | | | |||||| |||||||||||| |||||||||||||    
T  53971315 gtggatgctagacgtgctctaacatagtccgaaacttcaacatcttaccattcatcaggtatgatactatgattaggataatttgatgatttaatttaat 53971216  T
Q  118 ttggtagatctacctctacacacgtcttaatactccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaaat 217  Q
    |||||| || |||||||  ||| |||||| ||| |||||| |||||||  |||| || ||| |||||||||||||||||| ||||||  | |||||||||    
T  53971215 ttggtaaatatacctct--acatgtcttactaccccctccgtcttattgtaggagatggaggatggaatttatgaggacaattggcaggacccacaaaat 53971118  T
Q  218 attccgacgtgcatttcatctca 240  Q
     ||||||| || |||||||||||    
T  53971117 gttccgacatgtatttcatctca 53971095  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 53071908 - 53071964
Alignment:
Q  24 tgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 80  Q
    |||||||  |||||||||| ||||| || ||||||||||||| ||||||| ||||||    
T  53071908 tgctagaaatgcttcaacacagtccaaagcttcaacatcttatcattcatgaggttt 53071964  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 34036297 - 34036358
Alignment:
Q  19 gtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 80  Q
    ||||||||||||  |||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  34036297 gtggatgctagaaatgcttcaacacagtcccaagcttcaacatcttatcattcatgaggttt 34036358  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 6688093 - 6688157
Alignment:
Q  16 gaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 80  Q
    |||||||||| ||||  |||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  6688093 gaagtggatggtagaaatgcttcaacacagtcccaagcttcaacatcttatcattcatgaggttt 6688157  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 16164058 - 16163998
Alignment:
Q  19 gtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtt 79  Q
    |||||||||||| ||||||||||| || ||||| ||| |||||||| ||||||||||||||    
T  16164058 gtggatgctagaagtgcttcaacagaggcccaagcttgaacatcttgccattcatcaggtt 16163998  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 19935380 - 19935421
Alignment:
Q  39 aacatagtcccaaacttcaacatcttaccattcatcaggttt 80  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  19935380 aacattgtcccaaacttcaaaatcttaccattcatcaggttt 19935421  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 19966519 - 19966560
Alignment:
Q  39 aacatagtcccaaacttcaacatcttaccattcatcaggttt 80  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  19966519 aacattgtcccaaacttcaaaatcttaccattcatcaggttt 19966560  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 31014482 - 31014529
Alignment:
Q  33 tgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 80  Q
    |||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  31014482 tgcttcaacacagtcccaagcttcaacatcttatcattcataaggttt 31014529  T

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