View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_174 (Length: 250)
Name: NF9361A_low_174
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_174 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 77 - 243
Target Start/End: Original strand, 29670641 - 29670806
Alignment:
| Q |
77 |
ttttcccaataatcatagactacatcaacatcaagcaaaaaggtactgaagtgagtgaattttcaatccacaatcacctttctannnnnnnnncctctgt |
176 |
Q |
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| T |
29670641 |
ttttcccaataatcatagactacatcaacatcaagcaaaaaggtactgaagtgagtgaattttcaatccacaatcacctttcta-ttttttttcctctgt |
29670739 |
T |
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| Q |
177 |
ttttctcataaaaccttaacaaatcattagaaaggcatggatttaaacaaaactatttgaacaccaa |
243 |
Q |
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| T |
29670740 |
ttttctcataaaaccttaacaaatcattagaaaggcatggatttaaacaaaactatttgaacaccaa |
29670806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29670515 - 29670568
Alignment:
| Q |
1 |
cttcaaagtttctcttttgacaatatttcattaatattcaattaattaaagtcat |
55 |
Q |
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| T |
29670515 |
cttcaaagtttctcttt-gatgatatttcattaatattcaattaattaaagtcat |
29670568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 24406696 - 24406766
Alignment:
| Q |
173 |
ctgtttttctcataaaaccttaacaaatcattagaaaggcatggatttaaacaaaactatttgaacaccaa |
243 |
Q |
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| T |
24406696 |
ctgtttttctcataaaaccttaacaaatcattagaaaggcatgaatttaaacaaaactatttgaacaccaa |
24406766 |
T |
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