View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361A_low_181 (Length: 248)

Name: NF9361A_low_181
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361A_low_181
NF9361A_low_181
[»] chr6 (2 HSPs)
chr6 (113-211)||(385439-385537)
chr6 (5-85)||(385582-385662)
[»] chr4 (1 HSPs)
chr4 (5-82)||(38729918-38729995)


Alignment Details
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 385537 - 385439
Alignment:
Q  113 actatacagaatagaatgcctcggtaattatttttgtttgaaaaacatggtggcactgagagggttataagcgtaattttgaaaacccttttcgttgac 211  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  385537 actatacagaatagaatgcctaggtaattatttttgtttgaaaaacctggtggcactgagagggttataagcgtaattttgaaaacccttttcgttgac 385439  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 385662 - 385582
Alignment:
Q  5 tttctaagtttccagatgtgacctaagattcaattaaagaaacgtatatagtagggggaggcctgtacccataacctcaag 85  Q
    ||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  385662 tttctaactttccagatttgacataagattcaatcaaagaaacgtatatagtagggggaggcctgtacccataacctcaag 385582  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 38729918 - 38729995
Alignment:
Q  5 tttctaagtttccagatgtgacctaagattcaattaaagaaacgtatatagtagggggaggcctgtacccataacctc 82  Q
    ||||||| ||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  38729918 tttctaactttccagatttgacataagattcaatcaaagaaacatatatagtagggggaggcctgtacccataacctc 38729995  T

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