View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_189 (Length: 247)
Name: NF9361A_low_189
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_189 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5895095 - 5894872
Alignment:
| Q |
1 |
atgaggagtgctggattcaagataggagaaaatacctatctttcctttcatgaaagctttattttgaagaaaatgcttaaggatgctgttaagctttatg |
100 |
Q |
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| T |
5895095 |
atgaggagtgctggattcaagataggagaaaatacctatctttcctttcatgaaagctttattttgaagaaaatgcttaaggatgctgtgaagctttatg |
5894996 |
T |
|
| Q |
101 |
agtttgttatgactggtcctaacaa-agcctaggttgtagacaattattgagtagtattgtttcttttgacgagctcgatatggatttgttttcaagggc |
199 |
Q |
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||||||||||| ||||||||||||| | ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5894995 |
agtttgttatggctggtcctaacaagaacctaggttgtagaaatctattgagtagtattgtttcttttgacgagctcgatatggatttgttttcaagggc |
5894896 |
T |
|
| Q |
200 |
tgtgaaggtttttaccgaaaatgg |
223 |
Q |
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|||||||||||||||| ||||||| |
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| T |
5894895 |
tgtgaaggtttttaccaaaaatgg |
5894872 |
T |
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