View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361A_low_190 (Length: 247)

Name: NF9361A_low_190
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361A_low_190
NF9361A_low_190
[»] chr4 (8 HSPs)
chr4 (7-228)||(7372663-7372885)
chr4 (5-84)||(41668854-41668933)
chr4 (5-84)||(21124589-21124668)
chr4 (5-84)||(21144679-21144758)
chr4 (5-82)||(40303478-40303555)
chr4 (24-83)||(19936297-19936356)
chr4 (18-80)||(20136258-20136320)
chr4 (7-80)||(53423282-53423355)
[»] chr3 (5 HSPs)
chr3 (2-84)||(9107060-9107142)
chr3 (30-87)||(46786683-46786740)
chr3 (7-79)||(43790671-43790743)
chr3 (5-84)||(24481306-24481385)
chr3 (12-84)||(1543202-1543274)
[»] chr6 (5 HSPs)
chr6 (5-81)||(4349890-4349966)
chr6 (5-81)||(4350129-4350205)
chr6 (16-73)||(14333978-14334034)
chr6 (45-84)||(7453847-7453886)
chr6 (31-87)||(7271843-7271899)
[»] chr2 (5 HSPs)
chr2 (12-84)||(24026726-24026798)
chr2 (7-84)||(14902266-14902343)
chr2 (5-83)||(35664548-35664626)
chr2 (16-84)||(6584307-6584376)
chr2 (12-84)||(14994865-14994942)
[»] chr8 (3 HSPs)
chr8 (5-84)||(32236995-32237074)
chr8 (6-46)||(154667-154707)
chr8 (7-83)||(2296694-2296770)
[»] chr1 (7 HSPs)
chr1 (24-83)||(34454146-34454205)
chr1 (7-65)||(42312924-42312982)
chr1 (12-84)||(27664085-27664162)
chr1 (15-87)||(7230413-7230485)
chr1 (5-55)||(5450661-5450711)
chr1 (18-79)||(23165940-23166001)
chr1 (31-80)||(35938541-35938590)
[»] chr7 (7 HSPs)
chr7 (12-84)||(37808029-37808101)
chr7 (5-72)||(30275289-30275356)
chr7 (5-80)||(27746614-27746689)
chr7 (6-84)||(3412119-3412196)
chr7 (7-84)||(20246659-20246736)
chr7 (7-45)||(26772612-26772650)
chr7 (5-58)||(36683928-36683981)
[»] chr5 (1 HSPs)
chr5 (12-82)||(23127184-23127259)
[»] scaffold0758 (1 HSPs)
scaffold0758 (41-84)||(5369-5412)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 7372663 - 7372885
Alignment:
Q  7 tttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggccatgcgaacacatcaactttttt 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||| |||||||||| |||||    
T  7372663 tttgatgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccattgaaatctcagaaaccgccatgcggacacatcaaccttttt 7372762  T
Q  107 aaaatggagactcacaaggagtatatgtttctaatgtg-aaaagtaaaaagaagaagaaagtttactcatgtttttccgtctaaaggataaaaaggattg 205  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  7372763 aaaatggagactcacaaggagtatatgtttgtaatgtgaaaaagtaaaaagtagaagaaagtttactcatgtttttccgtcttaagaataaaaaggattg 7372862  T
Q  206 gaaaaccataatcatcatgtctg 228  Q
    ||| |||||||||||||||||||    
T  7372863 gaacaccataatcatcatgtctg 7372885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 41668933 - 41668854
Alignment:
Q  5 agtttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggcc 84  Q
    |||||| ||||||||||||||||||||||| || ||||||| ||||||||||||| ||||| ||||||||||||| ||||    
T  41668933 agtttgatgtttatatatatttattagttaggacccaaattataggttcgccctaggccaccaaaatctcagaaaaggcc 41668854  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 21124589 - 21124668
Alignment:
Q  5 agtttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggcc 84  Q
    |||||| |||||||||||||||||||||||| || ||||||||||||| | |||   |||||||||| ||||||||||||    
T  21124589 agtttgatgtttatatatatttattagttaaaattcaaattgtaggtttgtcctggaccactaaaatatcagaaacggcc 21124668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 21144679 - 21144758
Alignment:
Q  5 agtttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggcc 84  Q
    |||||| |||||||||||||||||||||||| || ||||||||||||| | |||   |||||||||| ||||||||||||    
T  21144679 agtttgatgtttatatatatttattagttaaaattcaaattgtaggtttgtcctggaccactaaaatatcagaaacggcc 21144758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 40303555 - 40303478
Alignment:
Q  5 agtttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacgg 82  Q
    ||||| || ||||||||||||||||||||| | ||||||||||| |||| | ||| || || ||||||||||||||||    
T  40303555 agtttcgtttttatatatatttattagttagggtccaaattgtaagttcactctaggcaaccaaaatctcagaaacgg 40303478  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 19936297 - 19936356
Alignment:
Q  24 tttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggc 83  Q
    ||||||||||| || |||||||||||||||| ||||  |||| |||||||||||||||||    
T  19936297 tttattagttaggacccaaattgtaggttcgtcctagaccaccaaaatctcagaaacggc 19936356  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 20136258 - 20136320
Alignment:
Q  18 tatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaac 80  Q
    |||||| |||||| |||| |  ||||||||||||||| ||||| |||||||||||||||||||    
T  20136258 tatataattattatttaaaactcaaattgtaggttcgacctaaaccactaaaatctcagaaac 20136320  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 53423282 - 53423355
Alignment:
Q  7 tttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaac 80  Q
    |||| ||||||||||||||||||||||| || | |||||||||||||  ||||  |||| ||||||||| ||||    
T  53423282 tttgatgtttatatatatttattagttaggacctaaattgtaggttcatcctataccaccaaaatctcataaac 53423355  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 9107142 - 9107060
Alignment:
Q  2 tcgagtttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggcc 84  Q
    |||| |||| ||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| |||| || ||||||||||    
T  9107142 tcgaatttgatgtttatatatatttattagttatgatccaaatggtaggttcgccctaggccaccaaaaacttagaaacggcc 9107060  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 46786740 - 46786683
Alignment:
Q  30 agttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggccatg 87  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  46786740 agttaagatccaaattgtaggttcgccctaggccaccaaaatctcagaaacggccatg 46786683  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 43790671 - 43790743
Alignment:
Q  7 tttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaa 79  Q
    |||| ||||||||||||||||||||||| || |||||||||| |||||||||| ||||| ||||||| |||||    
T  43790671 tttgatgtttatatatatttattagttaggacccaaattgtaagttcgccctaggccaccaaaatcttagaaa 43790743  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 24481385 - 24481306
Alignment:
Q  5 agtttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggcc 84  Q
    |||||| |||||||||||||||| ||||||   || ||||||||||||||| |||| |||  ||||||| ||||||||||    
T  24481385 agtttgatgtttatatatatttactagttagagtctaaattgtaggttcgctctaatccaacaaaatcttagaaacggcc 24481306  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 1543274 - 1543202
Alignment:
Q  12 tgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggcc 84  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||  ||  |||  ||||||||| ||||||||    
T  1543274 tgtttttatatatttattagttaggattcaaattgtaggttcgctttagaccatcaaaatctcataaacggcc 1543202  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 4349966 - 4349890
Alignment:
Q  5 agtttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacg 81  Q
    |||||| |||||||||||||||| |||||| || ||||||||| ||||||||||| ||||| |||||||||||||||    
T  4349966 agtttgatgtttatatatatttactagttatgacccaaattgtgggttcgccctaggccaccaaaatctcagaaacg 4349890  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 4350205 - 4350129
Alignment:
Q  5 agtttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacg 81  Q
    |||||| |||||||||||||||| |||||| || ||||||||| ||||||||||| ||||| |||||||||||||||    
T  4350205 agtttgatgtttatatatatttactagttatgacccaaattgtgggttcgccctaggccaccaaaatctcagaaacg 4350129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 14333978 - 14334034
Alignment:
Q  16 tatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatct 73  Q
    ||||||||| ||||||||| || |||||||||||||||||||| |||||| |||||||    
T  14333978 tatatatatatattagttaggacccaaattgtaggttcgccct-agccaccaaaatct 14334034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 7453847 - 7453886
Alignment:
Q  45 tgtaggttcgccctaagccactaaaatctcagaaacggcc 84  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  7453847 tgtaggttcgccctaggccactaaaatctcaaaaacggcc 7453886  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 7271843 - 7271899
Alignment:
Q  31 gttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggccatg 87  Q
    |||| |||||||||||||| |||| |||| ||||| ||||||||| |||| ||||||    
T  7271843 gttaggatccaaattgtagattcgtcctatgccaccaaaatctcataaactgccatg 7271899  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 24026726 - 24026798
Alignment:
Q  12 tgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggcc 84  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||  |||| ||||||||| || |||||    
T  24026726 tgtttatatatatttattagttaagatctaaattgtaggttcgccctagaccaccaaaatctcaaaatcggcc 24026798  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 14902343 - 14902266
Alignment:
Q  7 tttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggcc 84  Q
    |||| ||||||||||||||||||||||| || |||||||||| ||||||| ||  |||| ||||||| ||||||||||    
T  14902343 tttgatgtttatatatatttattagttaggacccaaattgtatgttcgccatagaccaccaaaatcttagaaacggcc 14902266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 35664548 - 35664626
Alignment:
Q  5 agtttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggc 83  Q
    |||||| | ||||||||  ||||||||||| |||||||| |||||||||||||||  |||| ||||||||| |||||||    
T  35664548 agtttgatatttatataggtttattagttaggatccaaaatgtaggttcgccctagaccaccaaaatctcaaaaacggc 35664626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 6584307 - 6584376
Alignment:
Q  16 tatatatatttattagttaagatccaaattgtaggttcgccctaag-ccactaaaatctcagaaacggcc 84  Q
    |||||||||| |||| ||| || ||||||||||||||||||| ||| |||| ||||||||||||||||||    
T  6584307 tatatatattcattaattaggacccaaattgtaggttcgcccaaagaccaccaaaatctcagaaacggcc 6584376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 14994865 - 14994942
Alignment:
Q  12 tgtttatatatatttattagttaagat-----ccaaattgtaggttcgccctaagccactaaaatctcagaaacggcc 84  Q
    ||||||||||||||||||||||| | |     |||||||||||||||| |||| |||| |||||||||| ||||||||    
T  14994865 tgtttatatatatttattagttaggttagagcccaaattgtaggttcgtcctacgccaataaaatctcataaacggcc 14994942  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 32236995 - 32237074
Alignment:
Q  5 agtttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggcc 84  Q
    |||||| ||||||||||||||||||||||| || |||||||||||||||| | || ||||| || |||||||||||||||    
T  32236995 agtttgatgtttatatatatttattagttaggacccaaattgtaggttcgtcttaggccaccaatatctcagaaacggcc 32237074  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 154667 - 154707
Alignment:
Q  6 gtttggtgtttatatatatttattagttaagatccaaattg 46  Q
    ||||| || |||||||||||||||||||| |||||||||||    
T  154667 gtttgatgattatatatatttattagttaggatccaaattg 154707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 2296694 - 2296770
Alignment:
Q  7 tttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggc 83  Q
    |||| ||||||||||||||||||| ||| |||| ||| | || ||||| ||||| |||  ||||| |||||||||||    
T  2296694 tttgatgtttatatatatttattaattaggatctaaaatataagttcgtcctaaaccatcaaaatatcagaaacggc 2296770  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 34454146 - 34454205
Alignment:
Q  24 tttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggc 83  Q
    ||||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||    
T  34454146 tttattagttaggacccaaattgtaggttcgccctaggccaccaaaatctcagaaacggc 34454205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 42312924 - 42312982
Alignment:
Q  7 tttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccac 65  Q
    |||| ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||    
T  42312924 tttgatgtttatatatatttattagtcaggatccaaattgcaggttcgccctaagccac 42312982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 27664085 - 27664162
Alignment:
Q  12 tgtttatatatatttattagttaagat-----ccaaattgtaggttcgccctaagccactaaaatctcagaaacggcc 84  Q
    ||||||||||||||||||||||| | |     ||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  27664085 tgtttatatatatttattagttaggttaggacccaaattgtaggttctccctaggccaccaaaatctcagaaacggcc 27664162  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 7230413 - 7230485
Alignment:
Q  15 ttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggccatg 87  Q
    ||||||||||||||||||||  || ||||||||||||||| ||||  |||| ||||||| |||||| ||||||    
T  7230413 ttatatatatttattagttagaattcaaattgtaggttcgtcctataccaccaaaatcttagaaacagccatg 7230485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 5450711 - 5450661
Alignment:
Q  5 agtttggtgtttatatatatttattagttaagatccaaattgtaggttcgc 55  Q
    |||||| ||||||||||||||||||||||| |||||||||| ||| |||||    
T  5450711 agtttgatgtttatatatatttattagttatgatccaaattatagattcgc 5450661  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 23165940 - 23166001
Alignment:
Q  18 tatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaa 79  Q
    ||||||||||||| ||| |||  ||||| |||||||||||||  |||| |||||||||||||    
T  23165940 tatatatttattaattaggatttaaattataggttcgccctagaccaccaaaatctcagaaa 23166001  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 35938541 - 35938590
Alignment:
Q  31 gttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaac 80  Q
    |||| ||||||||||||||||||  |||| ||||| ||||||||||||||    
T  35938541 gttaggatccaaattgtaggttcttcctaggccaccaaaatctcagaaac 35938590  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 37808101 - 37808029
Alignment:
Q  12 tgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggcc 84  Q
    ||||||||||||||||||||||| || | ||||| |||| ||||||||| |||| ||||||||| ||||||||    
T  37808101 tgtttatatatatttattagttaggacctaaattataggctcgccctaaaccaccaaaatctcataaacggcc 37808029  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 30275356 - 30275289
Alignment:
Q  5 agtttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatc 72  Q
    |||||| |||||||||||||||||||||||  ||||||||||||| ||||||| |  |||||||||||    
T  30275356 agtttgatgtttatatatatttattagttagaatccaaattgtagattcgccccagaccactaaaatc 30275289  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 27746689 - 27746614
Alignment:
Q  5 agtttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaac 80  Q
    |||||| |||||||||||||||||||||||  |  |||||| ||| ||| ||||| ||||| ||||||||||||||    
T  27746689 agtttgatgtttatatatatttattagttagcactcaaattatagattcaccctaggccaccaaaatctcagaaac 27746614  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 3412196 - 3412119
Alignment:
Q  6 gtttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggcc 84  Q
    ||||| |||||||||||||||||| ||||  | |||||||| ||||||| ||||  |||| ||||||||||||||||||    
T  3412196 gtttgatgtttatatatatttatttgttagaacccaaattgcaggttcgtcctagaccac-aaaatctcagaaacggcc 3412119  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 20246736 - 20246659
Alignment:
Q  7 tttggtgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccactaaaatctcagaaacggcc 84  Q
    |||| ||||||||||| ||||||||||| || | ||||| ||||||| || || ||||| ||||||||| ||||||||    
T  20246736 tttgatgtttatatatgtttattagttatgacctaaattataggttcaccataggccaccaaaatctcataaacggcc 20246659  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 26772650 - 26772612
Alignment:
Q  7 tttggtgtttatatatatttattagttaagatccaaatt 45  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  26772650 tttgatgtttatatatatttattagttaagacccaaatt 26772612  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 36683981 - 36683928
Alignment:
Q  5 agtttggtgtttatatatatttattagttaagatccaaattgtaggttcgccct 58  Q
    |||||| | |||||||| |||||||||||| || ||||||||||||||| ||||    
T  36683981 agtttgatatttatataaatttattagttaggacccaaattgtaggttcaccct 36683928  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 23127259 - 23127184
Alignment:
Q  12 tgtttatatatatttattagttaag-----atccaaattgtaggttcgccctaagccactaaaatctcagaaacgg 82  Q
    ||||||||||||||||||||||| |     ||||||||||||| ||||||||  ||||| ||||||||||||||||    
T  23127259 tgtttatatatatttattagttaggttaggatccaaattgtagattcgcccttggccaccaaaatctcagaaacgg 23127184  T

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Target: scaffold0758 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 5369 - 5412
Alignment:
Q  41 aaattgtaggttcgccctaagccactaaaatctcagaaacggcc 84  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||    
T  5369 aaattgtaggttcgttctaagccactaaaatctcataaacggcc 5412  T

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