View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_195 (Length: 246)
Name: NF9361A_low_195
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_195 |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 57 - 246
Target Start/End: Complemental strand, 42019519 - 42019327
Alignment:
| Q |
57 |
ggtcacatgtctcatcttctctaacattgagttgtttgtcaccacctaatcatgcaaggttccttcctctgtattattttatgaataaggttcttcctcc |
156 |
Q |
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| T |
42019519 |
ggtcacatgtctcatcttctctaacattgggttgtttgtcaccacctaatcatgcaaagttccttcctctgtattattttatgaataaggttcttccttc |
42019420 |
T |
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| Q |
157 |
tatgtactatggg---tcattgagaatcaaatgcttccatttattgattgttgtgaccagttaagttgctgcagtcttttaccacctggaaca |
246 |
Q |
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| T |
42019419 |
tatgttctatgggtgataattgagaatcaaatgcttccatttattgattgttgtgaccagttaagttgctgcagtcttttaccacttggaaca |
42019327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 42024914 - 42024871
Alignment:
| Q |
20 |
catcttcaagagtcgatgt--taggtgtggttgatatttggtca |
61 |
Q |
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| T |
42024914 |
catcttcaagagtcggtgtcttaggtgtggttgatatttggtca |
42024871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 126 - 246
Target Start/End: Complemental strand, 1252661 - 1252537
Alignment:
| Q |
126 |
tgtattattttatgaataa-ggttcttcctcctatgtactatgggtcat---tgagaatcaaatgcttccatttattgattgttgtgaccagttaagttg |
221 |
Q |
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| T |
1252661 |
tgtattattttatgaataaaggttcttccttctatgttctatgggtgataattgagaatcaaatgcttccatttattgattgttgtgaccagttaagttg |
1252562 |
T |
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| Q |
222 |
ctgcagtcttttaccacctggaaca |
246 |
Q |
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| T |
1252561 |
ctgcagtcttttaccacctggaaca |
1252537 |
T |
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