View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_20 (Length: 446)
Name: NF9361A_low_20
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 6 - 436
Target Start/End: Complemental strand, 46643186 - 46642756
Alignment:
| Q |
6 |
ttcaactactccaaacttttcattccactgatactttcaggcaattcaccaacaaactcattaaaactaacatcaaacactgtcactttatccaattttc |
105 |
Q |
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| T |
46643186 |
ttcaactgctccaaacttttcattccactgatactttcaggcaattcaccaacaaactcattaaaactaacatcaaacactgtcactttatccaattttc |
46643087 |
T |
|
| Q |
106 |
ctatatcattaggtaaacagcctttcattttgctgttcgtcataattatctcattgattgtatccttcatattcgctacactcgatggaatacacccttg |
205 |
Q |
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| T |
46643086 |
ctatatcattaggtaaacagcctttcattctgctgttcgtcataattatctcgttgattgtatctttcatattcgctacactcgatggaatacaaccttg |
46642987 |
T |
|
| Q |
206 |
tatatcattgttcgcgaacacaacaacagaagctggcatctttccgaaattttctggtaaagaaaatttgaatttgttgttgttgatgaaaagtgcatca |
305 |
Q |
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| T |
46642986 |
tatatcattgttcgcgaacacaacaacagaagctggcatctttccgaaattttctggtaaagaaaatttgaatttgttgttgttgatgaaaagtgcatca |
46642887 |
T |
|
| Q |
306 |
agtttgagatcaaagaggcctttaggaacatttccttgaaaattgttgtatcttatgtctaagtattttaatgaaggaatgcaaagaacaacctccggaa |
405 |
Q |
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| T |
46642886 |
agtttgagatcaaagaggcctttaggaacatttccttgaaaattgttgtatcttatgtccaagtattttaatgaaggaatgcaaagaacaacctccggga |
46642787 |
T |
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| Q |
406 |
atgttcctgagaattggttgttactgatgtc |
436 |
Q |
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| T |
46642786 |
atgttcctgagaattggttgttactgatgtc |
46642756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 436
Target Start/End: Complemental strand, 46640495 - 46640464
Alignment:
| Q |
405 |
aatgttcctgagaattggttgttactgatgtc |
436 |
Q |
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| T |
46640495 |
aatgttcctgagaattggttgttactgatgtc |
46640464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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