View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_201 (Length: 244)
Name: NF9361A_low_201
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_201 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 23852817 - 23853041
Alignment:
| Q |
20 |
aatgagcaggatggatatactgagcttcaagcttagattttgagtagggacagtttgaatcaaattgttctcctttttgtgggtaacatggattcctaag |
119 |
Q |
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| T |
23852817 |
aatgagcaggatggatatactgagcttcaagcttagattttgagtagggacagtttgaatcaaattgttctcctttttgtgggtaacatggattcctaag |
23852916 |
T |
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| Q |
120 |
gtcaatttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttccaagaggaaagtctaaataatggatca |
219 |
Q |
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| T |
23852917 |
gtcaatttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttccaagaggaaagtctaaataatggatca |
23853016 |
T |
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| Q |
220 |
ttaaagcttcctttgatttcaagaa |
244 |
Q |
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| T |
23853017 |
ttaaagcttcctttgatttcaagaa |
23853041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 95 - 244
Target Start/End: Original strand, 23752191 - 23752340
Alignment:
| Q |
95 |
tttgtgggtaacatggattcctaaggtcaatttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttcca |
194 |
Q |
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| T |
23752191 |
tttgtgggtagcatggattcctaaggtcaattttaacaacatgacctgtaatgttgctgcaacttatacctttccatttacaacattcatttccttccca |
23752290 |
T |
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| Q |
195 |
agaggaaagtctaaataatggatcattaaagcttcctttgatttcaagaa |
244 |
Q |
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| T |
23752291 |
agaggaaagtcttaatgatgtatcattaaagcttcctttgagttcaagaa |
23752340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 95 - 235
Target Start/End: Original strand, 22619584 - 22619724
Alignment:
| Q |
95 |
tttgtgggtaacatggattcctaaggtcaatttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttcca |
194 |
Q |
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| T |
22619584 |
tttgtgggtagcatggattcctaaggtcaatttttataacatgacctgtaatgttgctgcaacttatacctttccatttacaacattcatttccttccca |
22619683 |
T |
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| Q |
195 |
agaggaaagtctaaataatggatcattaaagcttcctttga |
235 |
Q |
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| T |
22619684 |
agaggaaagtcttaatgatgtatcattaaagcttcctttga |
22619724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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