View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_202 (Length: 244)
Name: NF9361A_low_202
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_202 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 48672321 - 48672529
Alignment:
| Q |
24 |
atatggaagctaaggaaaaagttaaaagaggagaccgtgtttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttggcgttcgatgcg |
123 |
Q |
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| T |
48672321 |
atatggaagctaaggaaaaagttaaaagaggagaccgtgtttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttggcgttcgatgcg |
48672420 |
T |
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| Q |
124 |
tcgtgttacaaaaccttcctctaggaacccttggcttgactgcattgatgcataccctgcttctctcaattaaaaagcacttttattattatgatcaatc |
223 |
Q |
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| T |
48672421 |
tcgtgttacaaaaccttcttctaggaacccttggcttgactgcattgatgcataccctgcttctctcaattaaaaagcacttttattattatgatcaatc |
48672520 |
T |
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| Q |
224 |
tatgatatt |
232 |
Q |
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||||||||| |
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| T |
48672521 |
tatgatatt |
48672529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 15239657 - 15239705
Alignment:
| Q |
64 |
ttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
112 |
Q |
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| T |
15239657 |
ttggcaaattgcatttggttctggttttaagtgtaatagtgctgtttgg |
15239705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 34053356 - 34053407
Alignment:
| Q |
64 |
ttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttggcgt |
115 |
Q |
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| T |
34053356 |
ttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgt |
34053407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 19742853 - 19742804
Alignment:
| Q |
63 |
tttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
112 |
Q |
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|||||||| |||| ||||| ||||| ||||||||||||| |||||||||| |
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| T |
19742853 |
tttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttgg |
19742804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 19797235 - 19797284
Alignment:
| Q |
63 |
tttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
112 |
Q |
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|||||||| |||| ||||| ||||| ||||||||||||| |||||||||| |
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| T |
19797235 |
tttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttgg |
19797284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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