View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_205 (Length: 244)
Name: NF9361A_low_205
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_205 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 3090829 - 3091046
Alignment:
| Q |
8 |
tttggtgttgcactttctgatccatctccttcctctcctgctcaacgattcatttctgaagatggtgttattaattcaagagctcgtgttctaggtggtg |
107 |
Q |
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| T |
3090829 |
tttggtgttgcactttctgatccatctccttcctctcctgctcaacgattcatttctgaagatggtgttattaattcaagagctcgtgttctaggtggtg |
3090928 |
T |
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| Q |
108 |
gaagttgtttgaatgccggcttctatactcgtgcaagccctcgctacgtaaggtatgtaacacaaaaataaaccattctctcaagacggtcaggagtaag |
207 |
Q |
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| T |
3090929 |
gaagttgtttgaatgccggcttctatactcgtgcaagccctcgctacgtaaggtatgtaacacaaaaataaaccattctctcaagacggtcaggagtaag |
3091028 |
T |
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| Q |
208 |
tctactatggtcacaact |
225 |
Q |
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|||||||||||||||||| |
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| T |
3091029 |
tctactatggtcacaact |
3091046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 3082475 - 3082653
Alignment:
| Q |
10 |
tggtgttgcactttctgatccatctccttcctctcctgctcaacgattcatttctgaagatggtgttattaattcaagagctcgtgttctaggtggtgga |
109 |
Q |
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||||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3082475 |
tggtgttccactctctgatacatctccttcttctcctgctcaacgattcatttctgaagatggtgttattaattcaagagctcgtgttctaggtggtgga |
3082574 |
T |
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| Q |
110 |
agttgtttgaatgccggcttctatactcgtgcaagccctcgctacgtaaggtatgtaacacaaaaataaaccattctctcaag |
192 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |
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| T |
3082575 |
agttgtttgaatgctggcttctacactcgtgcaagccctcgctatgtaag----gtaacacaaaaataaactattctttcaag |
3082653 |
T |
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