View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_207 (Length: 243)
Name: NF9361A_low_207
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_207 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 386010 - 385792
Alignment:
| Q |
20 |
caaaacatcactagctgtcacatccacagaatatcccatggtcttcatttcaagtagaactttggcagcaacatccacaagcttcttattagccagtaga |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386010 |
caaaacatcactagctgtcacatccacagaatatcccatcgtcttcatttcaagtagaactttggcagcaacatccacaagcttcttattagccagtaga |
385911 |
T |
|
| Q |
120 |
gataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcattgaattgtacagtttgatggcatgatcaatttgtccagacgcagcat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | ||||| |
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| T |
385910 |
gataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcattgaattgtacagtttcatggcatgatcaatttgtccggatgaagcat |
385811 |
T |
|
| Q |
220 |
gcatttccaagagataagc |
238 |
Q |
| |
|
|||||||||| ||| |||| |
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|
| T |
385810 |
gcatttccaatagacaagc |
385792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 38729532 - 38729753
Alignment:
| Q |
20 |
caaaacatcactagctgtcacatccacagaatatcccatggtcttcatttcaagtagaactttggcagcaacatccacaagcttcttattagccagtaga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
38729532 |
caaaacatcactagctgtcacatccacagaatatcccattgtcttcatttcaagtagaactttggcagcaacatccaccagcttcttattagcaagtaga |
38729631 |
T |
|
| Q |
120 |
gataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcattgaattgtacagtttgatggcatgatcaatttgtccagacgcagcat |
219 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |
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|
| T |
38729632 |
gataaaagaacagtataagtgctcaggcctggccttaaacctgcattagtcattgaattgtacagtttcatagcatgatcgatttgtccagacgcagcat |
38729731 |
T |
|
| Q |
220 |
gcatttccaagagataagcata |
241 |
Q |
| |
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|||||||||||||| ||||||| |
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|
| T |
38729732 |
gcatttccaagagacaagcata |
38729753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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