View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_212 (Length: 242)
Name: NF9361A_low_212
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_212 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 34444258 - 34444044
Alignment:
| Q |
8 |
tccaataatatcaatttttgaagaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctacca |
107 |
Q |
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| T |
34444258 |
tccactaacatcaatttttgaagaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctacca |
34444159 |
T |
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| Q |
108 |
cttccattaaatgaaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagtt |
207 |
Q |
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| T |
34444158 |
cttccattaaatgaaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagtt |
34444059 |
T |
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| Q |
208 |
ccaacgcggagataa |
222 |
Q |
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||||||||||||||| |
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| T |
34444058 |
ccaacgcggagataa |
34444044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 34437511 - 34437297
Alignment:
| Q |
8 |
tccaataatatcaatttttgaagaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctacca |
107 |
Q |
| |
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|||| ||| ||| ||||||||||||||| |||||||||||||||||||||| || | |||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
34437511 |
tccactaacatctatttttgaagaagtgcttatagatttccatgaagaggatttaagaggaaaccaaattctatcataaacatcatcttgatatctacca |
34437412 |
T |
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| Q |
108 |
cttccattaaatgaaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagtt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |
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| T |
34437411 |
cttccattaaatgaaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccaaactcagttttataaatagagttatcaattggtctaagtt |
34437312 |
T |
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| Q |
208 |
ccaacgcggagataa |
222 |
Q |
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|||| || ||||||| |
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| T |
34437311 |
ccaatgctgagataa |
34437297 |
T |
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