View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_213 (Length: 242)
Name: NF9361A_low_213
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_213 |
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| [»] scaffold0077 (1 HSPs) |
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Alignment Details
Target: scaffold0077 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 10989 - 10761
Alignment:
| Q |
14 |
aatcagacacgtaattaattgatagatacaaagttcccaaaaatagaaaatatattctaatggaaaatatcattttgctttattccttcctaatataaat |
113 |
Q |
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| T |
10989 |
aatcagacacgtaattaattgatagatacaaagttcccaaaaatagaaaatatattctaatggaaaatatcattttgctttattccttcctaatataaat |
10890 |
T |
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| Q |
114 |
attctctcaaaaagataaaaaataacatgtagaagtacaagtcaactgtaacaagcatagactcttgcaactttaaatacagcaacatttcacatattct |
213 |
Q |
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| T |
10889 |
attctctcaaaaagataaaaaataacatgtagaagtacaagtcaactgtaacaagcatagactcttgcaactttaaatacagcaacatttcacatattct |
10790 |
T |
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| Q |
214 |
ttctccacaaaaacattcttgaaacacca |
242 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
10789 |
ttctccacaaaaacattcttgaaacacca |
10761 |
T |
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