View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361A_low_218 (Length: 240)

Name: NF9361A_low_218
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361A_low_218
NF9361A_low_218
[»] chr4 (21 HSPs)
chr4 (22-240)||(24477652-24477870)
chr4 (26-240)||(24421375-24421589)
chr4 (26-240)||(24470134-24470348)
chr4 (158-240)||(24406619-24406701)
chr4 (26-111)||(24420559-24420644)
chr4 (26-111)||(24470743-24470828)
chr4 (68-132)||(24482203-24482267)
chr4 (41-96)||(24421246-24421301)
chr4 (28-111)||(24420657-24420740)
chr4 (41-96)||(24470422-24470477)
chr4 (22-84)||(24421419-24421481)
chr4 (22-84)||(24470242-24470304)
chr4 (50-96)||(24470614-24470660)
chr4 (50-96)||(24477392-24477438)
chr4 (26-84)||(24477512-24477570)
chr4 (26-111)||(24421279-24421364)
chr4 (26-111)||(24470359-24470444)
chr4 (26-111)||(24470551-24470636)
chr4 (26-111)||(24470982-24471067)
chr4 (29-90)||(24481334-24481395)
chr4 (38-87)||(24481510-24481559)
[»] chr1 (6 HSPs)
chr1 (28-69)||(11902377-11902418)
chr1 (22-93)||(11879469-11879540)
chr1 (41-69)||(11879685-11879713)
chr1 (23-87)||(11901906-11901970)
chr1 (41-93)||(11902065-11902117)
chr1 (41-93)||(52821119-52821171)
[»] scaffold0879 (1 HSPs)
scaffold0879 (41-96)||(4473-4528)
[»] chr2 (2 HSPs)
chr2 (26-93)||(41899968-41900035)
chr2 (49-93)||(41900279-41900323)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 24477652 - 24477870
Alignment:
Q  22 gtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatcgtggaggtggaaatatgtag 121  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24477652 gtacacatatggaggaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatcgtggaggtggatatatgtag 24477751  T
Q  122 taataaggtgggtatttgtggacatagggagttggaggtgatagagatagcggaggggggaacttgtagtaatatggaggtgatttggaataatatggtg 221  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24477752 taataaggtgggtatttgcagacatagggaggtggaggtgatagagatggcggaggtgggaacttgtagtaatatggaggtgatttggaataatatggtg 24477851  T
Q  222 gctgctgtccatgacttgg 240  Q
     ||||||||||||||||||    
T  24477852 cctgctgtccatgacttgg 24477870  T

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Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 26 - 240
Target Start/End: Original strand, 24421375 - 24421589
Alignment:
Q  26 acatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatcgtggaggtggaaatatgtagtaat 125  Q
    |||||||||| ||| || ||||||||||| ||||| || ||||| || ||||| || || |||||||| || ||| ||||||||||| || |||||||||    
T  24421375 acatatggaggaggaggagagggagatggaggtggtggggacttgtacacatacggaggaggtggtgagggagatggtggaggtggagatttgtagtaat 24421474  T
Q  126 aaggtgggtatttgtggacatagggagttggaggtgatagagatagcggaggggggaacttgtagtaatatggaggtgatttggaataatatggtggctg 225  Q
    |||||||||||||||||||||| |||| ||| || ||| ||||  | ||||| ||| | |||||||||||||||||||||||| ||||||||||||||||    
T  24421475 aaggtgggtatttgtggacatatggaggtggtggcgatggagaaggtggaggtggggatttgtagtaatatggaggtgatttgaaataatatggtggctg 24421574  T
Q  226 ctgtccatgacttgg 240  Q
     ||||||||||||||    
T  24421575 ttgtccatgacttgg 24421589  T

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Target: chr4; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 26 - 240
Target Start/End: Complemental strand, 24470348 - 24470134
Alignment:
Q  26 acatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatcgtggaggtggaaatatgtagtaat 125  Q
    |||||||||| ||| || ||||||||||| ||||| || ||||| || ||||| || || |||||||| || ||| ||||||||||| || |||||||||    
T  24470348 acatatggaggaggaggagagggagatggaggtggtggggacttgtacacatacggaggaggtggtgagggagatggtggaggtggagatttgtagtaat 24470249  T
Q  126 aaggtgggtatttgtggacatagggagttggaggtgatagagatagcggaggggggaacttgtagtaatatggaggtgatttggaataatatggtggctg 225  Q
    |||||||||||||||||||||| |||| ||| || ||| ||||  | ||||| ||| | |||||||||||||||||||||||| ||||||||||||||||    
T  24470248 aaggtgggtatttgtggacatatggaggtggtggcgatggagaaggtggaggtggggatttgtagtaatatggaggtgatttgaaataatatggtggctg 24470149  T
Q  226 ctgtccatgacttgg 240  Q
     ||||||||||||||    
T  24470148 ttgtccatgacttgg 24470134  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 24406619 - 24406701
Alignment:
Q  158 ggtgatagagatagcggaggggggaacttgtagtaatatggaggtgatttggaataatatggtggctgctgtccatgacttgg 240  Q
    |||||| ||||| | ||||| |||  |||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||    
T  24406619 ggtgatggagatggtggaggtggggtcttgtagtaatatggaggtggtttgaaataatatggtggctgctggccatgacttgg 24406701  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 24420559 - 24420644
Alignment:
Q  26 acatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatcgtggaggtgg 111  Q
    |||||||||| ||| ||||| ||||| || || ||||| |||||||||||||| || ||||||||||| |||||| |||| |||||    
T  24420559 acatatggaggagggggtgaaggagaaggaggaggaggggacttatagacatatggaggtggtggtgaaggggatggtggtggtgg 24420644  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 24470828 - 24470743
Alignment:
Q  26 acatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatcgtggaggtgg 111  Q
    |||||||| | ||| ||||| || |||||||| || ||||| || |||||||| ||||||||||| ||||||||| ||||||||||    
T  24470828 acatatggtggagggggtgaaggtgatggtgggggtggagatttgtagacatatggtggtggtggagatggggatggtggaggtgg 24470743  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 24482203 - 24482267
Alignment:
Q  68 ttatagacataaggtggtggtggtgatggggatcgtggaggtggaaatatgtagtaataaggtgg 132  Q
    |||||||||||||| |||||||||||||| ||| |||| |||||| || |||||||||| |||||    
T  24482203 ttatagacataaggaggtggtggtgatggagatggtggtggtggagatttgtagtaatatggtgg 24482267  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 24421246 - 24421301
Alignment:
Q  41 ggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatgg 96  Q
    |||||||| |||||||| ||||||||||| |||||||| || ||||||||||||||    
T  24421246 ggtgagggtgatggtggaggaggagacttgtagacatatggaggtggtggtgatgg 24421301  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 24420657 - 24420740
Alignment:
Q  28 atatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatcgtggaggtgg 111  Q
    ||||||||  |||||||| ||||||||||| |||||||| ||||| || || || |||||||| ||||| ||  ||||||||||    
T  24420657 atatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggtggaggtgg 24420740  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 24470477 - 24470422
Alignment:
Q  41 ggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatgg 96  Q
    |||||||| | |||||| ||||||||||| |||||||| || ||||||||||||||    
T  24470477 ggtgagggtgttggtggaggaggagacttgtagacatatggaggtggtggtgatgg 24470422  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 24421419 - 24421481
Alignment:
Q  22 gtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtgg 84  Q
    ||||||||| |||| ||||||||||||||||||||| || ||||| || |||  |||||||||    
T  24421419 gtacacatacggaggaggtggtgagggagatggtggaggtggagatttgtagtaataaggtgg 24421481  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 24470304 - 24470242
Alignment:
Q  22 gtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtgg 84  Q
    ||||||||| |||| ||||||||||||||||||||| || ||||| || |||  |||||||||    
T  24470304 gtacacatacggaggaggtggtgagggagatggtggaggtggagatttgtagtaataaggtgg 24470242  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 24470660 - 24470614
Alignment:
Q  50 gatggtggtggaggagacttatagacataaggtggtggtggtgatgg 96  Q
    |||||||| ||||||||||| |||||||| || ||||||||||||||    
T  24470660 gatggtggaggaggagacttgtagacatatggaggtggtggtgatgg 24470614  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 24477392 - 24477438
Alignment:
Q  50 gatggtggtggaggagacttatagacataaggtggtggtggtgatgg 96  Q
    |||||||| ||||||||||| |||||||| || ||||||||||||||    
T  24477392 gatggtggaggaggagacttgtagacatatggaggtggtggtgatgg 24477438  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 24477512 - 24477570
Alignment:
Q  26 acatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtgg 84  Q
    ||||||||||  || |||||||||||||||||||| |||  |||||||||||| |||||    
T  24477512 acatatggaggtggaggtgagggagatggtggtggtggactcttatagacatatggtgg 24477570  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 24421279 - 24421364
Alignment:
Q  26 acatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatcgtggaggtgg 111  Q
    ||||||||||  |||||||| ||||| |||||||| |||  |||||||||||| ||||| || ||||| || ||| | ||||||||    
T  24421279 acatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatggtgggggaggtgaaggagatggaggaggtgg 24421364  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 24470444 - 24470359
Alignment:
Q  26 acatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatcgtggaggtgg 111  Q
    ||||||||||  |||||||| ||||| |||||||| |||  |||||||||||| ||||| || ||||| || ||| | ||||||||    
T  24470444 acatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatggtgggggaggtgaaggtgatggaggaggtgg 24470359  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 24470636 - 24470551
Alignment:
Q  26 acatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatcgtggaggtgg 111  Q
    ||||||||||  |||||||| ||||| |||||||| |||  |||||||||||| ||||| || ||||| || ||| | ||||||||    
T  24470636 acatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatggtgggggaggtgaaggagatggaggaggtgg 24470551  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 24471067 - 24470982
Alignment:
Q  26 acatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatcgtggaggtgg 111  Q
    |||||||||| ||| ||||| ||||| || || ||||| ||||||||||| || || || |||||||| |||||| |||| |||||    
T  24471067 acatatggaggagggggtgaaggagaaggaggaggaggggacttatagacgtatggagggggtggtgaaggggatggtggtggtgg 24470982  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 24481334 - 24481395
Alignment:
Q  29 tatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtgg 90  Q
    ||||||| ||||||||| || || ||||| ||||| |||| ||| |||||||||||||||||    
T  24481334 tatggaggaggtggtgatggtgagggtggaggaggtgactcataaacataaggtggtggtgg 24481395  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 24481510 - 24481559
Alignment:
Q  38 ggtggtgagggagatggtggtggaggagacttatagacataaggtggtgg 87  Q
    |||||||| ||||||||||| ||||||||||| |||||||| || |||||    
T  24481510 ggtggtgatggagatggtggaggaggagacttgtagacatatggaggtgg 24481559  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 11902418 - 11902377
Alignment:
Q  28 atatggagaaggtggtgagggagatggtggtggaggagactt 69  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  11902418 atatggaggaggtggtgagggagatggtggtggaggagactt 11902377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 11879540 - 11879469
Alignment:
Q  22 gtacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtga 93  Q
    ||||||||| ||||  |||||||| |||||||| ||||| || ||||| || |||||||| |||||||||||    
T  11879540 gtacacataaggaggtggtggtgaaggagatggcggtggtggtgacttgtacacataaggaggtggtggtga 11879469  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 11879713 - 11879685
Alignment:
Q  41 ggtgagggagatggtggtggaggagactt 69  Q
    |||||||||||||||||||||||||||||    
T  11879713 ggtgagggagatggtggtggaggagactt 11879685  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 11901970 - 11901906
Alignment:
Q  23 tacacatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtgg 87  Q
    |||||||| |||| ||||||||||||||| || ||||| || ||||| ||  |||||||||||||    
T  11901970 tacacataaggaggaggtggtgagggagacggcggtggtggggacttgtactcataaggtggtgg 11901906  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 11902117 - 11902065
Alignment:
Q  41 ggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtga 93  Q
    ||||| |||||||||||||| || ||||| || |||||||| |||||||||||    
T  11902117 ggtgaaggagatggtggtggtggtgacttgtatacataaggaggtggtggtga 11902065  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 52821119 - 52821171
Alignment:
Q  41 ggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtga 93  Q
    ||||||||||| ||||||||||||||||| |||   ||||||||||| |||||    
T  52821119 ggtgagggagagggtggtggaggagacttgtagtagtaaggtggtggaggtga 52821171  T

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Target: scaffold0879 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 4528 - 4473
Alignment:
Q  41 ggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatgg 96  Q
    |||||||| |||||||| ||||||||||| |||||||| || ||||||||||||||    
T  4528 ggtgagggtgatggtggaggaggagacttgtagacatatggaggtggtggtgatgg 4473  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 41899968 - 41900035
Alignment:
Q  26 acatatggagaaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtga 93  Q
    |||||||||| |||||||||||| || |||||||| || ||||| |||||||| |||||||| |||||    
T  41899968 acatatggaggaggtggtgagggggaaggtggtggtggggacttgtagacatatggtggtggaggtga 41900035  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 41900279 - 41900323
Alignment:
Q  49 agatggtggtggaggagacttatagacataaggtggtggtggtga 93  Q
    ||||||||| ||||||||||| |||||||| || |||||||||||    
T  41900279 agatggtggaggaggagacttgtagacatatggaggtggtggtga 41900323  T

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