View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_233 (Length: 234)
Name: NF9361A_low_233
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_233 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 8293621 - 8293845
Alignment:
| Q |
10 |
cgtgttaatttctctgattccagatattttgttgctgcgttttgtatagcgtccgtgtcatgtgcatttgatctccatataattaattgcatctctggtt |
109 |
Q |
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| T |
8293621 |
cgtgttaatttctctgattccagatattttgttgctgcgttttgtatagcgtccgtgtcatgtgcatttgatctccatataattaattgcatctctggtt |
8293720 |
T |
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| Q |
110 |
taggtgctannnnnnnaataacaaatgtagaatattagtatgttaatagttaggttagtattgttttctctcgtgacgattaaattgattatcagtttct |
209 |
Q |
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| T |
8293721 |
taggtgctatttttttaataacaaatgtagaatattagtatgttaatagttaggttagtattgttttctctcgtgacgattaaattgattatcagtttct |
8293820 |
T |
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| Q |
210 |
gcaatgtacacgtttctgttgtttt |
234 |
Q |
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| T |
8293821 |
gcaatgtacacgtttctgttgtttt |
8293845 |
T |
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