View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_238 (Length: 231)
Name: NF9361A_low_238
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_238 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 12105929 - 12106127
Alignment:
| Q |
18 |
atgaataaccggttaattttaaaacggtagtgtagcaggcattggcagacaagatttaggtttgttggtcaattttgaaatgtcgatgaaggacccttaa |
117 |
Q |
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| T |
12105929 |
atgaataaccggttaattttaaaacggtagtgtagcaggcattggcagacaagatttaggtttgttggtcaattttgaaatgtcgatgaaggacccttaa |
12106028 |
T |
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| Q |
118 |
attagtattattaattaagagataaatagaaaacatgtt---gaaggtatacactaagtatatgtttagatcagcggtgagtttgatagaatttctgtg |
213 |
Q |
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| T |
12106029 |
attagtattattaattaagagataaacagaaaacatgttgaagaaggtagacactaagtgcatgtttagatcagcggtgagtttggtagaatttctgtg |
12106127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 82 - 192
Target Start/End: Complemental strand, 10676046 - 10675933
Alignment:
| Q |
82 |
ttggtcaattttgaaatgtcgatgaaggacccttaaattagtattattaattaagagataaatagaaaacatgtt---gaaggtatacactaagtatatg |
178 |
Q |
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| T |
10676046 |
ttggtcacttttgcaatgtcagtgaaggacccttaaattattatcattaattaagagataaatagaaaacatgttgaagaaggtagacactaagtacatg |
10675947 |
T |
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| Q |
179 |
tttagatcagcggt |
192 |
Q |
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| T |
10675946 |
tttagatcagcggt |
10675933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 405155 - 405225
Alignment:
| Q |
47 |
gtgtagcaggcattggcagacaagatttaggtttgttggtcaattttgaaatgtcgatgaaggacccttaa |
117 |
Q |
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| T |
405155 |
gtgtagtaggcatatgcagacaagcttttggttttttggtcatttttgaaatgtggatgaaggatccttaa |
405225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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