View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9361A_low_240 (Length: 230)
Name: NF9361A_low_240
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_240 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 35485319 - 35485094
Alignment:
| Q |
1 |
aataatcaaataacagatgattgtggttcacact-aacaattcaactgtttattcccctaaaaatatcaactattcacttattgttctaacaagctcaat |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35485319 |
aataatcaaataacagatgattgtggttcacacttaacaattcaactgtttattcccctaaaaatatcaactattcacttattgttctaacaagctcaat |
35485220 |
T |
|
| Q |
100 |
aattctttttgagataagtttagggttagttagtggtgtttctatgcaaggtagtgaaaaccttatagctcaagcagctctatttatatttatcttcctc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35485219 |
aattctttttgagataagtttagggttagttagtggtgtttctatgcaaggtagtgaaaaccttatagctcaagcagctctatttatatttatcttcctc |
35485120 |
T |
|
| Q |
200 |
agagaatcaattgaacagagaaaaat |
225 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
35485119 |
agagaatcaattgaacagagaaaaat |
35485094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University