View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_245 (Length: 230)
Name: NF9361A_low_245
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_245 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 1252505 - 1252289
Alignment:
| Q |
6 |
tgtttgactgagttgcattttctgttttgaaataatatactgtaagaatgttcaacctatcttttataagacaaatctttttaagtaaattaaaaaacta |
105 |
Q |
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| T |
1252505 |
tgtttgactgtgttgcattttctgttttgaaataatatactgtaagaatgttcaacctatcttttacaagacaaatcttg--aagtaaattaaaaaacta |
1252408 |
T |
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| Q |
106 |
tatgccaatatcaattgaaaaacatcttttcaaaaattgcttgataaacttattttgacatgttttaaagggatgtttgatgataacaatggtnnnnnnn |
205 |
Q |
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| T |
1252407 |
tatgccaatattaattgaaaaacatctttttaaaaattgcttgataaacttattttgacatgttttaaagggatgtttgatgataacaatggtaaaaaaa |
1252308 |
T |
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| Q |
206 |
ntgacttggacaatgattg |
224 |
Q |
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| T |
1252307 |
atgacttggacaatgattg |
1252289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 42019286 - 42019069
Alignment:
| Q |
17 |
gttgcattttctgttttgaaataatatactgtaagaatgttcaacctatcttttataagacaaatctttttaagtaaattaaaaaactatatgccaatat |
116 |
Q |
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| T |
42019286 |
gttgcattttctgttttgaaataatatactgtaagaatgttcaacctatcttttataagacaaatctttttaagtaaattaaaaaactatatgccaatat |
42019187 |
T |
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| Q |
117 |
caattgaaaaacatct-------tttcaaaaattgcttgataaacttattttgacatgttttaaagggatgtttgatgataacaatggtnnnnnnnntga |
209 |
Q |
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| T |
42019186 |
taattgaaaaacatctttaaaaattttaaaaattgcttgataaacttattttggcatgttttaaagggatgtttgatgataacaatggtaaaaaaaatga |
42019087 |
T |
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| Q |
210 |
cttggacaatgattgtga |
227 |
Q |
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| T |
42019086 |
cttggacaatgattgtga |
42019069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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