View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_25 (Length: 437)
Name: NF9361A_low_25
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_25 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Original strand, 12287209 - 12287633
Alignment:
| Q |
10 |
aatatcaaccaaacagcgtattagcggatatatccaaggaattgttttgtgctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgct |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
12287209 |
aatatcaaccaaacagcgtattagcggatatatccaaggaattgttttgtgctgcaagttatacaaagtcaaagtcatcaacgaaaacgtatattt-gct |
12287307 |
T |
|
| Q |
110 |
ttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctcctcactttccaaatcaaaatctctaaact |
209 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12287308 |
ttttcaaaccaaatttcaaatacactgaaactacacaccaattacactct--ctttctttccctctttctcgtcactttccaaatcaaaatctctaaact |
12287405 |
T |
|
| Q |
210 |
taagcttattatatattcacacaacttattacataacacctcaattccatcaaaacaagattgaagaacatagcaatatacattcattcttaaagtacta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12287406 |
taagcttattatatattcacacaacttattacataacacctcaattccatcaaaacaagattgaagaacatagcaatatacaatcattcttaaagtacta |
12287505 |
T |
|
| Q |
310 |
acacacatttgtgcacaacactattaaatcctatacgatgggtgtagcctcacatacattagaaataacggttatatccggggaaaatattcatgtaact |
409 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12287506 |
acacacatttgtgcacaacactattaaattctatacgatgggtgtagcctcacatacattagaaataacggttatatccggggaaaatattcatgtaatt |
12287605 |
T |
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| Q |
410 |
gaggatgcatatgttgttgttcgaggtg |
437 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
12287606 |
gaggatgcatatgttgttgttcgaggtg |
12287633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 61 - 437
Target Start/End: Original strand, 12266675 - 12267054
Alignment:
| Q |
61 |
ctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctt |
160 |
Q |
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|||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| | |
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| T |
12266675 |
ctgcaactaatacaaagtcaaagtcttcaacgaaaacgtatattttgctttttcaaaccaaatttcaattacattgaaaccacaaaccaattacactcgt |
12266774 |
T |
|
| Q |
161 |
tctttctttccctctttctcctcactttccaaatcaaaatctctaaacttaagcttattatatattcacacaacttattacataacacctcaattccatc |
260 |
Q |
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||||| |||||||||||| |||||||||| ||||||||| | || ||||||||||||||||||| ||||||||||| ||||||||||||||||| || |
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| T |
12266775 |
a-tttctctccctctttctcatcactttccatatcaaaatcccaaaccttaagcttattatatatttacacaacttataacataacacctcaattcactc |
12266873 |
T |
|
| Q |
261 |
aaaacaagattgaagaacatagcaatatacattcattcttaaagta-ctaaca--cacatttgtgcacaac-actattaaatcctatacgatgggtgtag |
356 |
Q |
| |
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| || || |||||| ||||| |||||| |||||||||||| | | |||||| | ||| | |||||| | ||||||| || ||| |||||||||| |
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| T |
12266874 |
acaataaacttgaaggacataacaatatccattcattcttacaccagctaacaggaagttttattcacaactaacattaaattctctactatgggtgtag |
12266973 |
T |
|
| Q |
357 |
cctcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtg |
437 |
Q |
| |
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|||||| ||||||||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||| |||||||||| |
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| T |
12266974 |
cctcacgcacattagaaatcacggttatatccggcgaaaatattcatgtaaccgaagatgcatacgttgtcgttcgaggtg |
12267054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 61 - 437
Target Start/End: Original strand, 12282401 - 12282780
Alignment:
| Q |
61 |
ctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctt |
160 |
Q |
| |
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|||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| | |
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| T |
12282401 |
ctgcaactaatacaaagtcaaagtcttcaacgaaaacgtatattttgctttttcaaaccaaatttcaattacattgaaaccacaaaccaattacactcgt |
12282500 |
T |
|
| Q |
161 |
tctttctttccctctttctcctcactttccaaatcaaaatctctaaacttaagcttattatatattcacacaacttattacataacacctcaattccatc |
260 |
Q |
| |
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||||| |||||||||||| |||||||||| ||||||||| | || ||||| ||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
12282501 |
a-tttctctccctctttctcatcactttccatatcaaaatcccaaaccttaaccttattatatattcacacaacttataacataacacctcaattcactc |
12282599 |
T |
|
| Q |
261 |
aaaacaagattgaagaacatagcaatatacattcattcttaaagta-ctaaca--cacatttgtgcacaac-actattaaatcctatacgatgggtgtag |
356 |
Q |
| |
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| || || |||||| ||||| |||||| |||||||||||| | | |||||| | ||| | |||||| | ||||||| || ||| |||||||||| |
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| T |
12282600 |
acaataaacttgaaggacataacaatatccattcattcttacaccagctaacaggaagttttattcacaactaacattaaattctctactatgggtgtag |
12282699 |
T |
|
| Q |
357 |
cctcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtg |
437 |
Q |
| |
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|||||| ||||||||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||| |||||||||| |
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| T |
12282700 |
cctcacgcacattagaaatcacggttatatccggcgaaaatattcatgtaaccgaagatgcatacgttgtcgttcgaggtg |
12282780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 437
Target Start/End: Original strand, 12256885 - 12256963
Alignment:
| Q |
359 |
tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtg |
437 |
Q |
| |
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||||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
12256885 |
tcacaaacattagaaattacggttatatctggtgaaaatattcatgtaacggaggatgcatacgttgttgttcgaggtg |
12256963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 437
Target Start/End: Original strand, 12264277 - 12264355
Alignment:
| Q |
359 |
tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtg |
437 |
Q |
| |
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||||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
12264277 |
tcacaaacattagaaattacggttatatctggtgaaaatattcatgtaacggaggatgcatacgttgttgttcgaggtg |
12264355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 359 - 437
Target Start/End: Original strand, 12270889 - 12270967
Alignment:
| Q |
359 |
tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtg |
437 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
12270889 |
tcacaaacattagaaattacgattatatctggagaaaatattcatgtaacagaggatgcatacgttgttgttcgaggtg |
12270967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 12270659 - 12270734
Alignment:
| Q |
105 |
ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc |
180 |
Q |
| |
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|||||||| |||| || | |||||||||| |||| | || |||||||||||||||||||||||| ||||||||||| |
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| T |
12270659 |
ttgcttttccaaatcataattcaaatacattgaaccaaccaaccaattacactctttctttcttcccctctttctc |
12270734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 12256650 - 12256725
Alignment:
| Q |
105 |
ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc |
180 |
Q |
| |
|
||||||||||||| |||| | |||||||| |||| | || |||||||||||| ||||||||||| |||| |||||| |
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|
| T |
12256650 |
ttgctttttcaaatcaaaatccaaatacattgaaccaaccaaccaattacaccctttctttcttcccctttttctc |
12256725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 12264042 - 12264117
Alignment:
| Q |
105 |
ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc |
180 |
Q |
| |
|
||||||||||||| |||| | |||||||| |||| | || |||||||||||| ||||||||||| |||| |||||| |
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| T |
12264042 |
ttgctttttcaaatcaaaatccaaatacattgaaccaaccaaccaattacaccctttctttcttcccctttttctc |
12264117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 29197446 - 29197546
Alignment:
| Q |
127 |
aaatacactgaaactacaaaccaattacactctttctttctttccctctttctcctcactttccaaatcaaaatctctaaacttaagcttattatatatt |
226 |
Q |
| |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | | ||||||||||||| |||||||| |
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| T |
29197446 |
aaatacaccgaaacaacaaaccaattacactctttctttctttccctctttctcaccactttccatatcaaaa-cccaaaacttaagcttaatatatatt |
29197544 |
T |
|
| Q |
227 |
ca |
228 |
Q |
| |
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|| |
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|
| T |
29197545 |
ca |
29197546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 437
Target Start/End: Original strand, 29197535 - 29197689
Alignment:
| Q |
284 |
aatatacattcattctt-aaagtactaacacacatttgtgcacaacactattaaatcctatacgatgggtgtagcctcacatacattagaaataacggtt |
382 |
Q |
| |
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|||||| |||||||||| ||||||| ||||| |||||||||||| || |||| | ||| |||||| |||| |||| |||||||||||||| ||| |
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| T |
29197535 |
aatatatattcattctttaaagtacacacacattcttgtgcacaacaacatcaaattttctactatgggtatagcttcacgcacattagaaataacagtt |
29197634 |
T |
|
| Q |
383 |
atatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtg |
437 |
Q |
| |
|
||| |||| |||||||||||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
29197635 |
ataaccggtgaaaatattcatataactgaggatgcatacgttgtcgttcgaggtg |
29197689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 29197351 - 29197413
Alignment:
| Q |
12 |
tatcaaccaaacagcgtattagcggatatatccaaggaattgttttgtgctgcaagttataca |
74 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |
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| T |
29197351 |
tatcaaccaaacagcgtattagcggatatatccacggaattgtcttgtgctgcaagtaataca |
29197413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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