View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361A_low_250 (Length: 230)

Name: NF9361A_low_250
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361A_low_250
NF9361A_low_250
[»] chr7 (2 HSPs)
chr7 (1-85)||(8028077-8028161)
chr7 (154-228)||(8027925-8028009)
[»] chr8 (1 HSPs)
chr8 (1-85)||(770732-770817)
[»] chr1 (1 HSPs)
chr1 (1-85)||(51389237-51389321)
[»] chr5 (1 HSPs)
chr5 (13-85)||(4351838-4351911)
[»] chr3 (2 HSPs)
chr3 (53-85)||(12572186-12572218)
chr3 (53-85)||(13548650-13548682)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 8028161 - 8028077
Alignment:
Q  1 tgattatatttatataaatcttgggtatttaaaattgaaattatgtaggttatatagaatcatccacaaagttagtctaacacaa 85  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8028161 tgattatatttctataaatcttgggtatttaaaattgaaattatgtaggttatatagaatcatccgcaaagttagtctaacacaa 8028077  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 8028009 - 8027925
Alignment:
Q  154 ctgaattacttgagtttactaacaatcaatgatttctt----------tctaggactagaaagaactcttactcatatatccaat 228  Q
    ||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||    
T  8028009 ctgaattacttgagtttactaacaatcaatgatttctttctgctactatctaggactagaaagaactcttactcatatatccaat 8027925  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 770732 - 770817
Alignment:
Q  1 tgattatatttatataaatcttgggtatttaaaattgaaattatgtaggt-tatatagaatcatccacaaagttagtctaacacaa 85  Q
    ||||||||||  |||||||||| || || ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  770732 tgattatattgctataaatcttaggcatataaaattgaaattatgtaggtctatatagaatcatccccaaagttagtctaacacaa 770817  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 51389321 - 51389237
Alignment:
Q  1 tgattatatttatataaatcttgggtatttaaaattgaaattatgtaggtta-tatagaatcatccacaaagttagtctaacacaa 85  Q
    ||||||||||  |||||||||| || |||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||    
T  51389321 tgattatattgttataaatcttaggcatttaaaattgaaattatgtaggtcagtatagaatcatcc-caaagttagtctaacacaa 51389237  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 4351838 - 4351911
Alignment:
Q  13 tataaatcttgggtatttaaaattgaaattatgtaggt-tatatagaatcatccacaaagttagtctaacacaa 85  Q
    |||||||||| |  ||||||||||||||||||| |||| | ||||||||||||| |||||||||||||||||||    
T  4351838 tataaatcttagacatttaaaattgaaattatgcaggtctttatagaatcatccccaaagttagtctaacacaa 4351911  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 12572218 - 12572186
Alignment:
Q  53 tatagaatcatccacaaagttagtctaacacaa 85  Q
    ||||||||||||| |||||||||||||||||||    
T  12572218 tatagaatcatccccaaagttagtctaacacaa 12572186  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 13548682 - 13548650
Alignment:
Q  53 tatagaatcatccacaaagttagtctaacacaa 85  Q
    ||||||||||||| |||||||||||||||||||    
T  13548682 tatagaatcatccccaaagttagtctaacacaa 13548650  T

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