View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_251 (Length: 229)
Name: NF9361A_low_251
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_251 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 6921822 - 6921602
Alignment:
| Q |
6 |
aattatacctgtttaacacactacaaaccaacttggcgaaaccataaacttatctccatttagccaagcaatccaaagtatgatgttgttgtaaggagtt |
105 |
Q |
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| T |
6921822 |
aattatacccgtctaacacactacaaaccaacttagtgaaaccataaagttatttccatttagccaagcaacccaaagtatgatgttgt---aaggcctt |
6921726 |
T |
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| Q |
106 |
ccgatttacaaacttgcgatcttccctaatataaggcttaaacacatgtaaagtacaacgagggagcaataatgaccagacctagggtcctactaaacct |
205 |
Q |
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| T |
6921725 |
ccgatctacaaacttgcgatcttccctaatataaggcttaaacacatgtaaagtaaaacgaggaagcaataatgaccagacctagggtcctactaaacct |
6921626 |
T |
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| Q |
206 |
ggatcagcaaccacccgataaaga |
229 |
Q |
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| T |
6921625 |
ggatcagcaaccacccgataaaga |
6921602 |
T |
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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 10946761 - 10946669
Alignment:
| Q |
20 |
aacacactacaaaccaacttggcgaaaccataaacttatctccatttagccaagcaatccaaagtatgatgttgttgtaaggagttccgattt |
112 |
Q |
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| T |
10946761 |
aacacactataaaccaacttggcgaaaccgtcagcttttctccatttagtcaagcaacccagaatatgatgttattgcaaggacttccgattt |
10946669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 174
Target Start/End: Original strand, 19283734 - 19283850
Alignment:
| Q |
58 |
tctccatttagccaagcaatccaaagtatgatgttgttgtaaggagttccgatttacaaacttgcgatcttccctaatataaggcttaaacacatgtaaa |
157 |
Q |
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| T |
19283734 |
tctccacttagccaagcaacctaggatatgacgttgttgcaaggacttcctatttccagacccacgatcttgcctagtctgaggcttgaacacctgtaaa |
19283833 |
T |
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| Q |
158 |
gtacaacgagggagcaa |
174 |
Q |
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| T |
19283834 |
gtacaacgaggaagcaa |
19283850 |
T |
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