View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_253 (Length: 229)
Name: NF9361A_low_253
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_253 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 36037909 - 36037687
Alignment:
| Q |
1 |
ttgcagattcgccgtaataagtatctgcagcccaattagtaccaagaggaacaacttgaatgaacacagatttaggtttcatgaacataaaatgtgtcat |
100 |
Q |
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| T |
36037909 |
ttgcaggttcgccgtaataagtatctgcagcccaattagtaccaagaggaacaacttgaatgaacacagatttaggtttcatgaacataaaatgtgtcat |
36037810 |
T |
|
| Q |
101 |
agcagctccatgaacaccaatcataacgtcgctttcgtttagtaccctataaatctttgccaattccgttgttttctgaggttttaaaacatttacctta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36037809 |
agcagctccatgaacaccaatcataacgtcgctttcgtttagtaccctataaatctttgccaattctgttgttttctgaggttttaaaacatttacctta |
36037710 |
T |
|
| Q |
201 |
aaaccaatttcctctgccatttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
36037709 |
aaaccaatttcctctgccatttt |
36037687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 166
Target Start/End: Complemental strand, 36028479 - 36028356
Alignment:
| Q |
42 |
ccaagaggaacaacttgaatgaacacagatttaggtttcatgaacataaaatgtgtcatagcagctccatgaacaccaatcataacgtcgctttcgttta |
141 |
Q |
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||||||| ||||| ||||||||||||| | | ||||||||||||||||||||||||| ||||||||||||||||||| || ||| || | ||| |||| |
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| T |
36028479 |
ccaagagaaacaatttgaatgaacacaaaacttggtttcatgaacataaaatgtgtcagtgcagctccatgaacaccaaacacaacatcacattcattta |
36028380 |
T |
|
| Q |
142 |
gtaccctataaatctttgccaattc |
166 |
Q |
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|| || ||||||||||||||||| |
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| T |
36028379 |
ata-actctaaatctttgccaattc |
36028356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 8880054 - 8879985
Alignment:
| Q |
51 |
acaacttgaatgaacacagatttaggtttcatgaacataaaatgtgtcatagcagctccatgaacaccaa |
120 |
Q |
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|||| ||||||||||||| | | |||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
8880054 |
acaatttgaatgaacacaaaacttggtttcctgaacataaaatgtgtcagtgcagctccatgaacaccaa |
8879985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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