View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_255 (Length: 229)
Name: NF9361A_low_255
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_255 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 48055367 - 48055490
Alignment:
| Q |
19 |
acaactgcagaccatgtggtattcatgaacaatttcattactaaacaagaagacatagatctcacctaaccttgcttactttaatatgggcatttctgcc |
118 |
Q |
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| T |
48055367 |
acaactgcagaccatgtggtattcatgaacaatttcattactaaacaagaagacatagatctcacctaaccttgcttacttcaatatgggcatttctgcc |
48055466 |
T |
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| Q |
119 |
caaaaccaattttcatttgatatt |
142 |
Q |
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| T |
48055467 |
caaaaccaattttcatttgatatt |
48055490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 48049926 - 48050020
Alignment:
| Q |
19 |
acaactgcagaccatgtggtattcatgaacaatttcattactaaacaagaagacatagatctcacctaaccttgcttactttaatatgggcattt |
113 |
Q |
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|||||||||||||||||||||| ||| |||| ||||| || |||||||||||||||| ||||||||||||||||||||||| ||||||| ||||| |
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| T |
48049926 |
acaactgcagaccatgtggtatgcattaacattttcaatagtaaacaagaagacatatatctcacctaaccttgcttacttcaatatggccattt |
48050020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 48042139 - 48042232
Alignment:
| Q |
19 |
acaactgcagaccatgtggtattcatgaacaatttcattactaaacaagaagacatagatctcacctaaccttgcttactttaatatgggcattt |
113 |
Q |
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||||||||||||||||||| || ||| |||||||| | || ||| ||||||| |||| ||||||||||||| ||||||||| ||||||||||||| |
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| T |
48042139 |
acaactgcagaccatgtggcatgcataaacaattttaatagtaa-caagaagtcatatatctcacctaaccatgcttacttcaatatgggcattt |
48042232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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