View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_263 (Length: 227)
Name: NF9361A_low_263
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_263 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 39322446 - 39322307
Alignment:
| Q |
88 |
tttgtacactgaccataatatgtgactgattttattttttcgaacaggaatttgcatattaatataatacgctactttgaaattcttgaaggggagattg |
187 |
Q |
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| T |
39322446 |
tttgtacactgaccataatatgtgaatgattttattttttcgaacaggaatttgcatattaatataatacgctactttgaaattcttgaaggggaaattg |
39322347 |
T |
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| Q |
188 |
tttatcaactattattaaactcaactaaattatcaaccta |
227 |
Q |
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| T |
39322346 |
tttatcaactattattaaactcaactaaattatcaaccta |
39322307 |
T |
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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 39322492 - 39322444
Alignment:
| Q |
17 |
acctgtgtgccatcctggaactttacttttgcatatttgtaaattattt |
65 |
Q |
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| T |
39322492 |
acctgtgtgccatcctggaactttacttttgcttatttgtaaattattt |
39322444 |
T |
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