View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9361A_low_274 (Length: 223)
Name: NF9361A_low_274
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_274 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 51255491 - 51255292
Alignment:
| Q |
10 |
ggtgttgtcagatagtggcaccataacactatatcatagcggaatttgaacaaatcccttttactctgtgatacgctccttagtacaaagtgttgtcaaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51255491 |
ggtgttgtcagatagtggcaccataacactatatcatagcagaatttgaacaa-tcccttttactctgtgatacgctccttagtacaaagtgttgtcaaa |
51255393 |
T |
|
| Q |
110 |
tagtcgctatcgcggcaagctgcagcctgtagcatagtagaatttgtacaaacgctattttccacaatctgcatctgacaacattgccctaaatttatta |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51255392 |
tagtcgctatcgcggcaagctgcagcctgtagcatagtagaatttgtacaaacgctattttccacaatctgcatctgacaacattgccctagatttatta |
51255293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 13298523 - 13298590
Alignment:
| Q |
46 |
tagcggaatttgaacaaatcccttttactctgtgatacgctccttagtacaaagtgttgtcaaatagt |
113 |
Q |
| |
|
|||||||||||||||||||| || || ||||||||| ||| ||||||||||||| ||||||||||| |
|
|
| T |
13298523 |
tagcggaatttgaacaaatcactattgttctgtgatatgctatttagtacaaagtgctgtcaaatagt |
13298590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 13458882 - 13458792
Alignment:
| Q |
21 |
atagtggcaccat-aacactatatcatagcggaatttgaacaaatcccttttactctgtgatacgctccttagtacaaagtgttgtcaaat |
110 |
Q |
| |
|
|||||||||| || ||||||||||||||| | |||||||||||||| | || || || ||||||| |||||| ||||||||||||||| |
|
|
| T |
13458882 |
atagtggcactattaacactatatcatagtgaaatttgaacaaatcaccattgttccgtaatacgctatttagtataaagtgttgtcaaat |
13458792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 26373105 - 26373144
Alignment:
| Q |
74 |
tctgtgatacgctccttagtacaaagtgttgtcaaatagt |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26373105 |
tctgtgatacgctatttagtacaaagtgttgtcaaatagt |
26373144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 9163756 - 9163817
Alignment:
| Q |
52 |
aatttgaacaaatcccttttactctgtgatacgctccttagtacaaagtgttgtcaaatagt |
113 |
Q |
| |
|
||||||||||||||||| || || || ||||||| |||||||||| |||||||||||||| |
|
|
| T |
9163756 |
aatttgaacaaatccctattgttccgttatacgctatttagtacaaaatgttgtcaaatagt |
9163817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 26273102 - 26273040
Alignment:
| Q |
50 |
ggaatttgaacaaatcccttttactctgtgatacgctccttagtacaaagtgttgtcaaatag |
112 |
Q |
| |
|
|||||||||| ||||| || || ||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
26273102 |
ggaatttgaataaatcactattgttctgtgatacgctgtttagtacaaagtgttgtccaatag |
26273040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 33979608 - 33979532
Alignment:
| Q |
36 |
cactatatcatagcggaatttgaacaaatcccttttactctgtgatacgctccttagtacaaagtgttgtcaaatag |
112 |
Q |
| |
|
||||||||||||| | |||||||||||| | || || ||||||||||||| | |||| ||||| ||||||||||| |
|
|
| T |
33979608 |
cactatatcatagggaaatttgaacaaaccactattgttctgtgatacgctgttcagtaaaaagttttgtcaaatag |
33979532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 35849514 - 35849466
Alignment:
| Q |
149 |
gaatttgtacaaac-gctattttccacaatctgcatctgacaacattgc |
196 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
35849514 |
gaatttgaacaaaccgctattttccacaatctgcaattgacaacattgc |
35849466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University