View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361A_low_276 (Length: 223)

Name: NF9361A_low_276
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361A_low_276
NF9361A_low_276
[»] chr3 (3 HSPs)
chr3 (19-199)||(3237669-3237849)
chr3 (88-133)||(8969257-8969302)
chr3 (51-131)||(41469685-41469765)
[»] chr7 (2 HSPs)
chr7 (19-204)||(16331913-16332098)
chr7 (27-112)||(32059573-32059658)
[»] chr6 (2 HSPs)
chr6 (19-200)||(33098239-33098420)
chr6 (88-132)||(10515308-10515352)
[»] chr1 (1 HSPs)
chr1 (88-134)||(31882006-31882052)
[»] scaffold1689 (1 HSPs)
scaffold1689 (88-132)||(65-109)
[»] chr2 (1 HSPs)
chr2 (88-132)||(21085868-21085912)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 3237849 - 3237669
Alignment:
Q  19 acatcacacctctacggtttagtcttacatgcgtaggtaaacattccctacacactcaccaaaccatactcttaactttcggaggcactttcaatttcca 118  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  3237849 acataacacctctacggtttagtcttacacgcgtaggtaaacattccctacacactctccaaaccatactcttaactttctgaggcactttcaatttcca 3237750  T
Q  119 tatgccactccaatgatcattcttcctaaaatgagaattatccactatgtcttccatacacaaacgctacacgcttcttac 199  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3237749 tatgccactccaatgaccattcttcctaagatgagaattatccactatgtcttccatacacaaacgctacacgcttcttac 3237669  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 8969257 - 8969302
Alignment:
Q  88 tcttaactttcggaggcactttcaatttccatatgccactccaatg 133  Q
    |||||||||| |||||||||||||||  ||| ||||||||||||||    
T  8969257 tcttaactttaggaggcactttcaatcgccaaatgccactccaatg 8969302  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 41469765 - 41469685
Alignment:
Q  51 gtaggtaaacattccctacacactcaccaaaccatactcttaactttcggaggcactttcaatttccatatgccactccaa 131  Q
    |||||||||||||| |||||||||| ||| | |||| ||||||| || || || ||||| |||||||| || |||| ||||    
T  41469765 gtaggtaaacattctctacacactcgccacaacatattcttaaccttaggtggaacttttaatttccaaattccaccccaa 41469685  T

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Target: chr7 (Bit Score: 122; Significance: 9e-63; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 16332098 - 16331913
Alignment:
Q  19 acatcacacctctacggtttagtcttacatgcgtaggtaaacattccctacacactcaccaaaccatactcttaactttcggaggcactttcaatttcca 118  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||  |||||||||||||| |||||||||||||||||||    
T  16332098 acataacacctctacggtttagtattacacgcgtaggtaaacattccctacgcactctccaaacactactcttaactttcagaggcactttcaatttcca 16331999  T
Q  119 tatgccactccaatgatcattcttcctaaaatgagaattatccactatgtcttccatacacaaacgctacacgcttcttaccaaat 204  Q
     ||||||||||||||| |||| ||||||| |||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||    
T  16331998 catgccactccaatgaccattattcctaagatgagaattatccattttgtcttccatacacaaacggtacgcgcttcttaccaaat 16331913  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 32059658 - 32059573
Alignment:
Q  27 cctctacggtttagtcttacatgcgtaggtaaacattccctacacactcaccaaaccatactcttaactttcggaggcactttcaa 112  Q
    ||||||| ||| | ||||||| | ||||| ||||||| ||||||||||| ||| |||||| |||||||||| || || ||||||||    
T  32059658 cctctacagttcaatcttacacgagtaggcaaacatttcctacacactcgccacaccatattcttaacttttgggggaactttcaa 32059573  T

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Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 33098420 - 33098239
Alignment:
Q  19 acatcacacctctacggtttagtcttacatgcgtaggtaaacattccctacacactcaccaaaccatactcttaactttcggaggcactttcaatttcca 118  Q
    |||| ||||||||||| ||||||||| || | ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  33098420 acataacacctctacgatttagtcttgcacgtgtaggtaaacattccctacacactctccaaaccatgctcttaactttcggaggcactttcaatctcca 33098321  T
Q  119 tatgccactccaatgatcattcttcctaaaatgagaattatccactatgtcttccatacacaaacgctacacgcttcttacc 200  Q
     ||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||  ||| | |||||||||    
T  33098320 catgccactccaatgaccattcttcctaagatgagaattatccactatgtcttcaatacacaaacagtacgcacttcttacc 33098239  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 10515352 - 10515308
Alignment:
Q  88 tcttaactttcggaggcactttcaatttccatatgccactccaat 132  Q
    |||| ||||| ||||||||||||||| ||||||| ||||||||||    
T  10515352 tcttgactttgggaggcactttcaatctccatataccactccaat 10515308  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 31882052 - 31882006
Alignment:
Q  88 tcttaactttcggaggcactttcaatttccatatgccactccaatga 134  Q
    |||||||||| ||||| |||||||||||| |||||||||||||||||    
T  31882052 tcttaacttttggaggtactttcaatttctatatgccactccaatga 31882006  T

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Target: scaffold1689 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1689
Description:

Target: scaffold1689; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 109 - 65
Alignment:
Q  88 tcttaactttcggaggcactttcaatttccatatgccactccaat 132  Q
    |||||||||| || |||||||||||| |||||||||| |||||||    
T  109 tcttaactttagggggcactttcaatctccatatgccgctccaat 65  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 21085868 - 21085912
Alignment:
Q  88 tcttaactttcggaggcactttcaatttccatatgccactccaat 132  Q
    |||| ||||| |||||||||||||||||||| || ||||||||||    
T  21085868 tcttgactttaggaggcactttcaatttccagataccactccaat 21085912  T

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