View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_282 (Length: 221)
Name: NF9361A_low_282
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_282 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 34633186 - 34633033
Alignment:
| Q |
68 |
tctttatttttgtgttctgagttgagtatataaatatatttttaaattgtgtagaaaaatacttggggcagtcttccatatgctgaggactgagaaatca |
167 |
Q |
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| T |
34633186 |
tcttcatttttgtgttctgagttgagtatataaatatatttttaaattgtgtagaaaaatacttggggcagtcttccatatgctgaggactgagaaatca |
34633087 |
T |
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| Q |
168 |
ttacagttgattgtggcaagttataagcttctggttgatttggaaaaggtatgt |
221 |
Q |
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| T |
34633086 |
ttacagttgattgtggcaagttataagcttctggttgatttggaaaaggtatgt |
34633033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 14301416 - 14301271
Alignment:
| Q |
75 |
ttttgtgttctgagttgagtatataaatatatttttaaattgtgtagaaaaatacttggggcagtcttccatatgctgaggactgagaaatcattacagt |
174 |
Q |
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| T |
14301416 |
ttttgtgttctacattgagtatatgaatatatttt-aaattgtgtagaaaaatatgtggggtagtcttccatatgctgaggactgtgaagtcattacagt |
14301318 |
T |
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| Q |
175 |
tgattgtggcaagttataagcttctggttgatttggaaaaggtatgt |
221 |
Q |
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| T |
14301317 |
tgataatggcatgtcataagcttctggttgatttggaaaaggtatgt |
14301271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 28518816 - 28518871
Alignment:
| Q |
23 |
atcttctgtgaagggaaggtagccttattaattcaatcaagcatttctttattttt |
78 |
Q |
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| T |
28518816 |
atcttctgtgaagggaaggtaaccttattaattcaatcaagcatttctttattttt |
28518871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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