View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_283 (Length: 220)
Name: NF9361A_low_283
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_283 |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 3586705 - 3586903
Alignment:
| Q |
21 |
ggacatgcttattcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttctt |
120 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||||| ||||| |
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| T |
3586705 |
ggacatgcttattcttcttaactgttcccgcattttctacatgtttatcttaact-ttcccgcattttttatttgcctatatatataagttattcttctt |
3586803 |
T |
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| Q |
121 |
aaccgttcccacatctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgcatctattttattttgtttgtttt |
220 |
Q |
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| T |
3586804 |
aaccgttcccacatctcttcaacctagctgctgctgttgtcagacttttcagatctgcaggtactattttttaccgcatctatttcattttgtttgtttt |
3586903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 32 - 220
Target Start/End: Complemental strand, 9789750 - 9789562
Alignment:
| Q |
32 |
ttcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttcttaaccgttccca |
131 |
Q |
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| T |
9789750 |
ttcttcttaactgttcccgcattttctacatgcttatcttaattgttcccgcattttttatttgcctatatatataagttattcttcttaaccgttccca |
9789651 |
T |
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| Q |
132 |
catctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgcatctattttattttgtttgtttt |
220 |
Q |
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| T |
9789650 |
catatcttcaacctagctgctgctgttgtcagacttttcagatctacaggtactatttttcactgcatctattttattttgtttgtttt |
9789562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 43 - 220
Target Start/End: Original strand, 44504580 - 44504751
Alignment:
| Q |
43 |
tgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttcttaaccgttcccacatctcttcaa |
142 |
Q |
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|||||| |||||||||||||| |||||| |||| ||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
44504580 |
tgttcccgcattttctacatgtttatctcaactgttcccgcattttttatttgcctatatatataagttattcttcttaaccgttcccacatctcttcaa |
44504679 |
T |
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| Q |
143 |
cctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgcatctattttattttgtttgtttt |
220 |
Q |
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| T |
44504680 |
cttagctgctgctgttgtcagacttttcagatc------tactatttttcactgcatctatattattttgtttgtttt |
44504751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 98 - 220
Target Start/End: Original strand, 31678513 - 31678635
Alignment:
| Q |
98 |
tatagatataagttatttttcttaaccgttcccacatctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgc |
197 |
Q |
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|||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| || |
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| T |
31678513 |
tatatatataagttattcttcttaaccgttcccacatcttttcaacctagctgctgctgttgtcagacttttcagatctacaggtacgatttttcaccgc |
31678612 |
T |
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| Q |
198 |
atctattttattttgtttgtttt |
220 |
Q |
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| T |
31678613 |
atctattttattttgtttgtttt |
31678635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 31678375 - 31678441
Alignment:
| Q |
21 |
ggacatgcttattcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattt |
87 |
Q |
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|||||||||||| |||||||| |||||| |||||||||||||||||||||||| | ||||||||||| |
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| T |
31678375 |
ggacatgcttatgcttcttaactgttcccgcattttctacatgcttatcttaattgttcccgcattt |
31678441 |
T |
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