View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_288 (Length: 219)
Name: NF9361A_low_288
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_288 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 31998088 - 31997905
Alignment:
| Q |
21 |
aaataggtcaaaagactttgattnnnnnnnttaaaatccaattcttatgcagagccagaaagatatacaaaccaactgttaccatgaaatttagcagcta |
120 |
Q |
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| T |
31998088 |
aaataggtcaaaagacttcgattaaaaaaattaaaatccaattcttatgcagagccagaaagataaacaaaccaactgtgaccaagaaatttagcagcta |
31997989 |
T |
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| Q |
121 |
atatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgaggcattttctt |
204 |
Q |
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| T |
31997988 |
atatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacgtccacgaggcattttctt |
31997905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 31996644 - 31996615
Alignment:
| Q |
175 |
tgcaagtccacatccacgaggcattttctt |
204 |
Q |
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| T |
31996644 |
tgcaagtccacatccacgaggcattttctt |
31996615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 15843120 - 15843026
Alignment:
| Q |
113 |
agcagctaatatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgaggcattttcttcga |
207 |
Q |
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| T |
15843120 |
agcaggtaatgtacttccctccagaggcacattgccccctccaacaagaccatctcctactatgcaagtccacatccacgaggtattttcttcga |
15843026 |
T |
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