View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_292 (Length: 217)
Name: NF9361A_low_292
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_292 |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 19287741 - 19287652
Alignment:
| Q |
11 |
tgagagtgattggagtttgtttatggttttggaggagtctttaaggatgcttaagcaatgtatgtgtggaatgtgtatcagttttcatgc |
100 |
Q |
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| T |
19287741 |
tgagagtgattggagtttatttatggctttggaggagtctttgaggatggttaaacaatggatgtgtgaaatgtgtatgagttttcatgc |
19287652 |
T |
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Target: scaffold0329 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 16484 - 16582
Alignment:
| Q |
11 |
tgagagtgattggagtttgtttatggttttggaggagtctttaaggatgcttaagcaatgtatgtgtggaatgtgtatcagttttcatgccatgagtcgt |
110 |
Q |
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| T |
16484 |
tgagagtaattggagtttgtttatggctttggaggagactttgaggatg-ttaaacaatggatgtttggaatgtgtatgagttttcatgtcatgagtcgt |
16582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 6921403 - 6921464
Alignment:
| Q |
143 |
tactaatgagacagtggaggtcacgagtcacattgtacatattttaaaaccatctataaaat |
204 |
Q |
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| T |
6921403 |
tactaataagagaggggaggtcaggagtcacattgtacatattttaaaaccatctataaaat |
6921464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 35149632 - 35149746
Alignment:
| Q |
26 |
tttgtttatggttttggaggagtctttaaggatgcttaagcaatgtatgtgtggaatgtgtatcagttttcatgccatgagtcgtgcatgtcattattct |
125 |
Q |
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| T |
35149632 |
tttgtttatggtgttggaggagtctttgaagatggttgcgcaatgaatgtttggaaaatgtatgagttttcatgccatgagtaacgcatgtcatcatcct |
35149731 |
T |
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| Q |
126 |
aatggtatggttcat |
140 |
Q |
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| T |
35149732 |
gatggtctagttcat |
35149746 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 49715 - 49531
Alignment:
| Q |
19 |
attggagtttgtttatggttttggaggagtctttaaggatgcttaagcaatgtatgtgtggaatgtgtatcagttttcatgccatgagtcgtgcatgtca |
118 |
Q |
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| T |
49715 |
attggagtttgtttatggcgtttgaaaagtctatgaggatggttgagcaatggatatttggaaggtgtataaattttcataccatgagccgtgcatgtca |
49616 |
T |
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| Q |
119 |
ttattctaatggtatggttcatcttactaatgagacagtggaggtcacgagtcacattgtacatattttaaaaccatctataaaa |
203 |
Q |
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| T |
49615 |
ccaccctgatggtctggtttgtgttactaatgagacatgagagtttaagagccacattctacatatttcaaaaccaactagaaaa |
49531 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 6819482 - 6819543
Alignment:
| Q |
57 |
atgcttaagcaatgtatgtgtggaatgtgtatcagttttcatgccatgagtcgtgcatgtcat |
119 |
Q |
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| T |
6819482 |
atgcttaagcaatgaatgtgtggaatgtgtaagagtttt-gtgtcataagtcgtgcatgtcat |
6819543 |
T |
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