View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_294 (Length: 215)
Name: NF9361A_low_294
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_294 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 42635090 - 42634913
Alignment:
| Q |
19 |
acactttgaccaaactgatgagattttgattcctttgtaggggtcaaattctgactataataataatcaggatcacttgtggagtggaagatgtttctgc |
118 |
Q |
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| T |
42635090 |
acactttgaccaaattgatgagattttgattcctttgtaggggtcaaattctgactataataataatcaggatcacttgtggagtgaaagatgtttctgc |
42634991 |
T |
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| Q |
119 |
gttttgtgttgatgtgttgtttt-ccgaatcaatttcgacaatcctatcacttttttcgtcactcctgctatatgttc |
195 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42634990 |
gttttgtgttgatgtgttgttttcccgaatcaatttcgacaatcctatcacttttttcgtcactcctgctatatgttc |
42634913 |
T |
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