View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_297 (Length: 213)
Name: NF9361A_low_297
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_297 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 20171286 - 20171471
Alignment:
| Q |
9 |
acggcatacgagatctcatcatgcaagtactacaatagatgcacnnnnnnntcaaagttgcaatgtataaggaacccaaaacgaatcatatatgtttgtc |
108 |
Q |
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| T |
20171286 |
acggcataccatacctcatcatgcaagtactacaatacatgcacaaaaaaatcaaagttgcaatgtctaaggaacccaaaacgaatcatatatgtttgt- |
20171384 |
T |
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| Q |
109 |
tgctttaaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaacaaggaaataatcacaagccatcttgatgtc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20171385 |
-gctttaaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaacaaggaaataatcacaagccatcttaatgtc |
20171471 |
T |
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Back To:
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Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 44392996 - 44393181
Alignment:
| Q |
9 |
acggcatacgagatctcatcatgcaagtactacaatagatgcacnnnnnnntcaaagttgcaatgtataaggaacccaaaacgaatcatatatgtttgtc |
108 |
Q |
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||||||||| | | ||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44392996 |
acggcataccatacctcatcatgcaagtactacaatacatgcacaaaaaaatcaaagttgcaatgtctaaggaacccaaaacgaatcatatatgtttgt- |
44393094 |
T |
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| Q |
109 |
tgctttaaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaacaaggaaataatcacaagccatcttgatgtc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44393095 |
-gctttaaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaacaaggaaataatcacaagccatcttaatgtc |
44393181 |
T |
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