View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_298 (Length: 213)
Name: NF9361A_low_298
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_298 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 56168532 - 56168744
Alignment:
| Q |
1 |
gggagattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcctgatgtggctcatgt |
100 |
Q |
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| T |
56168532 |
gggagattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcctgatgtggctcatgt |
56168631 |
T |
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| Q |
101 |
tatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtactggtcgtgcaggaaagacaggtgtggctacaacattcctgact |
200 |
Q |
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| T |
56168632 |
tatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtactggtcgtgcaggaaagacaggtgtggctacaacattcctgact |
56168731 |
T |
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| Q |
201 |
cttcaggacactg |
213 |
Q |
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| T |
56168732 |
cttcaggacactg |
56168744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 707178 - 706966
Alignment:
| Q |
1 |
gggagattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcctgatgtggctcatgt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
707178 |
gggaaattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcctgatgtggctcatgt |
707079 |
T |
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| Q |
101 |
tatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtactggtcgtgcaggaaagacaggtgtggctacaacattcctgact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |
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| T |
707078 |
tatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtaccggccgtgcaggaaagacgggtgtggctacaacattcctgact |
706979 |
T |
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| Q |
201 |
cttcaggacactg |
213 |
Q |
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| T |
706978 |
cttcaggacactg |
706966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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