View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_299 (Length: 213)
Name: NF9361A_low_299
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_299 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 76 - 213
Target Start/End: Original strand, 40614659 - 40614796
Alignment:
| Q |
76 |
tgataagcagcaaagcaatagcatccatcctctccaagaaagcacgcttggctttgggtctcggcgccgctgcaactactgtgtactcctctgtccttgt |
175 |
Q |
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| T |
40614659 |
tgataagcagcaaagcaatagcatccatcgtctccaagaaagctcgcttggctttgggtctcggcgccgctgcaactactgtgtactcctctgtccttgt |
40614758 |
T |
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| Q |
176 |
cgaccaattccacgacactcttccagaatctgttggtg |
213 |
Q |
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| T |
40614759 |
cgaccaattccacggcactcttccagaatctgttggtg |
40614796 |
T |
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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 40610698 - 40610743
Alignment:
| Q |
79 |
taagcagcaaagcaatagcatccatcctctccaagaaagcacgctt |
124 |
Q |
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| T |
40610698 |
taagcagccaagcaaaagcatccaacctcttcaagaaagcacgctt |
40610743 |
T |
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