View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361A_low_310 (Length: 208)

Name: NF9361A_low_310
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361A_low_310
NF9361A_low_310
[»] chr2 (23 HSPs)
chr2 (12-187)||(27118506-27118681)
chr2 (12-187)||(34156829-34157004)
chr2 (13-187)||(31891576-31891750)
chr2 (12-185)||(3784472-3784645)
chr2 (12-187)||(16163417-16163592)
chr2 (12-187)||(34303551-34303726)
chr2 (21-187)||(21703412-21703578)
chr2 (21-187)||(19456669-19456835)
chr2 (36-148)||(27434734-27434846)
chr2 (17-165)||(27392813-27392961)
chr2 (36-148)||(23128856-23128968)
chr2 (36-148)||(12655381-12655493)
chr2 (36-148)||(28882053-28882165)
chr2 (38-148)||(20837759-20837869)
chr2 (84-145)||(11635482-11635543)
chr2 (84-145)||(11641671-11641732)
chr2 (84-148)||(32049685-32049749)
chr2 (81-145)||(37925377-37925441)
chr2 (78-145)||(21677475-21677542)
chr2 (78-188)||(13936794-13936904)
chr2 (78-148)||(34279330-34279400)
chr2 (81-190)||(261013-261122)
chr2 (36-148)||(37375000-37375112)
[»] chr8 (14 HSPs)
chr8 (12-187)||(9354444-9354619)
chr8 (12-187)||(19659257-19659432)
chr8 (12-187)||(44562923-44563098)
chr8 (36-148)||(16283292-16283404)
chr8 (17-166)||(22081114-22081263)
chr8 (18-148)||(19687923-19688053)
chr8 (36-148)||(16277397-16277509)
chr8 (36-148)||(2137519-2137631)
chr8 (36-148)||(14557470-14557582)
chr8 (18-148)||(18710411-18710541)
chr8 (18-148)||(19286290-19286420)
chr8 (78-148)||(27609165-27609235)
chr8 (18-145)||(31490013-31490140)
chr8 (81-148)||(31354412-31354479)
[»] chr7 (16 HSPs)
chr7 (12-187)||(31088609-31088784)
chr7 (12-187)||(45733283-45733458)
chr7 (21-187)||(16041155-16041321)
chr7 (21-187)||(16450143-16450309)
chr7 (36-165)||(16503550-16503679)
chr7 (36-165)||(16518586-16518715)
chr7 (18-148)||(5127818-5127948)
chr7 (18-148)||(5159348-5159478)
chr7 (63-148)||(10917052-10917137)
chr7 (36-148)||(2154417-2154529)
chr7 (78-148)||(11424963-11425033)
chr7 (60-145)||(5147530-5147615)
chr7 (60-145)||(26435125-26435210)
chr7 (81-148)||(4145310-4145377)
chr7 (84-145)||(45387235-45387296)
chr7 (81-145)||(11441449-11441513)
[»] chr6 (23 HSPs)
chr6 (12-187)||(13522275-13522450)
chr6 (12-187)||(33374458-33374633)
chr6 (12-187)||(8892512-8892687)
chr6 (12-187)||(8903747-8903922)
chr6 (13-187)||(28162477-28162651)
chr6 (21-164)||(22477501-22477644)
chr6 (80-180)||(20160588-20160688)
chr6 (80-180)||(22172143-22172243)
chr6 (36-148)||(22935121-22935233)
chr6 (36-148)||(23857566-23857678)
chr6 (18-180)||(24304830-24304992)
chr6 (18-164)||(26918202-26918348)
chr6 (36-148)||(13299195-13299307)
chr6 (36-148)||(15424561-15424673)
chr6 (36-148)||(26999913-27000025)
chr6 (36-148)||(24863557-24863669)
chr6 (36-148)||(26988841-26988953)
chr6 (37-148)||(16749695-16749806)
chr6 (18-148)||(29549300-29549430)
chr6 (18-151)||(29501228-29501361)
chr6 (81-148)||(4525174-4525241)
chr6 (81-148)||(27044275-27044342)
chr6 (17-145)||(30558263-30558391)
[»] chr5 (25 HSPs)
chr5 (12-187)||(13184804-13184979)
chr5 (12-187)||(13440650-13440825)
chr5 (12-187)||(33877078-33877253)
chr5 (12-187)||(11325625-11325800)
chr5 (21-187)||(22888310-22888476)
chr5 (36-187)||(25198884-25199035)
chr5 (36-190)||(23892058-23892212)
chr5 (36-190)||(24969876-24970030)
chr5 (36-148)||(24688355-24688467)
chr5 (36-148)||(30934488-30934600)
chr5 (78-148)||(11549248-11549318)
chr5 (18-148)||(33292362-33292492)
chr5 (18-148)||(33777321-33777451)
chr5 (36-148)||(23718186-23718298)
chr5 (36-148)||(23752648-23752760)
chr5 (36-148)||(22999312-22999424)
chr5 (17-145)||(30168302-30168430)
chr5 (78-148)||(9548741-9548811)
chr5 (81-145)||(31431325-31431389)
chr5 (18-145)||(3789360-3789487)
chr5 (81-151)||(32599664-32599734)
chr5 (17-145)||(18375613-18375741)
chr5 (81-145)||(18500949-18501013)
chr5 (17-145)||(33516189-33516317)
chr5 (81-145)||(43078146-43078210)
[»] chr3 (39 HSPs)
chr3 (12-187)||(17994084-17994259)
chr3 (12-187)||(4625727-4625902)
chr3 (12-187)||(5652170-5652345)
chr3 (21-187)||(16626806-16626972)
chr3 (21-178)||(18530186-18530343)
chr3 (12-139)||(5713007-5713134)
chr3 (12-139)||(5723917-5724044)
chr3 (12-139)||(5757433-5757560)
chr3 (12-139)||(5768324-5768451)
chr3 (18-148)||(15893048-15893178)
chr3 (18-148)||(8301606-8301736)
chr3 (36-148)||(4796995-4797107)
chr3 (36-148)||(18051066-18051178)
chr3 (18-148)||(4892999-4893129)
chr3 (18-148)||(8211527-8211657)
chr3 (18-148)||(22387917-22388047)
chr3 (18-148)||(35880552-35880682)
chr3 (19-148)||(32438944-32439073)
chr3 (36-148)||(15741424-15741536)
chr3 (78-148)||(4721477-4721547)
chr3 (36-148)||(8295779-8295891)
chr3 (36-148)||(18277394-18277506)
chr3 (36-148)||(18292695-18292807)
chr3 (36-148)||(18307996-18308108)
chr3 (36-148)||(20065850-20065962)
chr3 (36-148)||(29149097-29149209)
chr3 (18-148)||(6192102-6192232)
chr3 (78-148)||(10395982-10396052)
chr3 (18-151)||(5596705-5596838)
chr3 (84-145)||(28116302-28116363)
chr3 (60-145)||(29665330-29665415)
chr3 (84-148)||(7996414-7996478)
chr3 (84-148)||(10642922-10642986)
chr3 (81-145)||(47023302-47023366)
chr3 (81-148)||(5466834-5466901)
chr3 (78-148)||(7073058-7073128)
chr3 (18-148)||(18330460-18330585)
chr3 (81-145)||(11110706-11110770)
chr3 (17-145)||(17985301-17985429)
[»] scaffold0260 (1 HSPs)
scaffold0260 (12-187)||(2917-3092)
[»] chr4 (19 HSPs)
chr4 (12-187)||(24460864-24461039)
chr4 (21-187)||(15227716-15227882)
chr4 (21-178)||(1900103-1900260)
chr4 (21-187)||(15285187-15285353)
chr4 (21-187)||(14235787-14235953)
chr4 (17-190)||(15391591-15391764)
chr4 (36-148)||(17013858-17013970)
chr4 (18-148)||(14664858-14664988)
chr4 (18-148)||(24592612-24592742)
chr4 (18-148)||(34189258-34189388)
chr4 (19-148)||(24112506-24112635)
chr4 (18-148)||(54833230-54833360)
chr4 (36-148)||(14763605-14763717)
chr4 (36-148)||(36344813-36344925)
chr4 (78-145)||(6569753-6569820)
chr4 (84-145)||(5005776-5005837)
chr4 (84-148)||(27163618-27163682)
chr4 (90-148)||(21969613-21969671)
chr4 (18-119)||(19373101-19373202)
[»] chr1 (4 HSPs)
chr1 (12-187)||(20340594-20340769)
chr1 (21-165)||(20460935-20461079)
chr1 (21-190)||(16208284-16208453)
chr1 (84-147)||(41793610-41793673)
[»] scaffold0124 (2 HSPs)
scaffold0124 (21-165)||(20240-20384)
scaffold0124 (36-148)||(30296-30408)
[»] scaffold0109 (1 HSPs)
scaffold0109 (17-165)||(21391-21539)
[»] scaffold0089 (3 HSPs)
scaffold0089 (36-148)||(29606-29718)
scaffold0089 (36-148)||(40370-40482)
scaffold0089 (78-148)||(47286-47356)
[»] scaffold0029 (1 HSPs)
scaffold0029 (18-148)||(431-561)
[»] scaffold0143 (1 HSPs)
scaffold0143 (36-148)||(27135-27247)
[»] scaffold0336 (1 HSPs)
scaffold0336 (81-148)||(8120-8187)
[»] scaffold0237 (1 HSPs)
scaffold0237 (17-145)||(15234-15362)


Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 27118506 - 27118681
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  27118506 atggacatcaatgctgctcagctacctccgtcgtacccgcatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 27118605  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||||| | | ||||| || |||||||||||||||||||||||||||||||||    
T  27118606 cgggtcaacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagca 27118681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 34156829 - 34157004
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  34156829 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 34156928  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||||| | |  |||| || |||||||||||||||||||||||||||||||||    
T  34156929 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagca 34157004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 31891750 - 31891576
Alignment:
Q  13 tggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||||||    
T  31891750 tggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctttgccatc 31891651  T
Q  113 gggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||| |||||||||||||||||||||||| | | ||||| || |||||||||||||||||||||||||||||||||    
T  31891650 gggacaacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagca 31891576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 3784472 - 3784645
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  3784472 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 3784571  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacag 185  Q
    ||||||||||||||||||||||||||||| | |  |||| || |||||||||||||||||||||||||||||||    
T  3784572 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacag 3784645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 16163417 - 16163592
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| |||||||||||||||||||||||| |||||||||    
T  16163417 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtattctttgccat 16163516  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||||| | |  |||| || |||||||||||||||||||||||||||||||||    
T  16163517 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagca 16163592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 34303726 - 34303551
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  34303726 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 34303627  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||| | | |  |||| || |||||||||||||||||||||||||||||||||    
T  34303626 cgggtcaacctcaggtacccgttaatgtcgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagca 34303551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 21703578 - 21703412
Alignment:
Q  21 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 120  Q
    ||||||||  || |||||||||||||||| ||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||    
T  21703578 aatgctgcctagttacctccgtcgtacccatatgcgccatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 21703479  T
Q  121 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    |||||||||||||||||||| | | ||| |||| |||||||||||| |||| |||||||| ||||||    
T  21703478 ctcaggtacccgttaatgccgtcgttcaacaaatgcaacaacagccaccagttcaacaacaacagca 21703412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 19456835 - 19456669
Alignment:
Q  21 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 120  Q
    |||||||| ||| |||||||||||||||| ||||||||||||| ||||| | | || ||||||||||||||||||||||||||| | |||||||||||||    
T  19456835 aatgctgcccagttacctccgtcgtacccatatgcgcaatactttcagcatcctttctttccaccattctatcatcagtatcctctaccatcgggtcaac 19456736  T
Q  121 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||| |||||||||||||| | | |||||| |||||||||||| ||||||||||||| ||||||    
T  19456735 ctcaggtgcccgttaatgccatcgtttagcaaatgcaacaacagccaccagctcaacaacaacagca 19456669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 27434846 - 27434734
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||||||||| |||||||  |||||||||| | | || ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  27434846 cctccgtcgtacccatatgcgccgtactctcagcatcctttctttccaccattctatcatcagtaccctttgccaccgggtcaacctcaagtacccgtta 27434747  T
Q  136 atgccattgctca 148  Q
    |||| ||||||||    
T  27434746 atgcaattgctca 27434734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 27392813 - 27392961
Alignment:
Q  17 catcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 116  Q
    |||| |||||||||||||||||||  |||||| |||   |||||||||||||| | | || || |||||||||||||| ||||||||    ||  |||||    
T  27392813 catcgatgctgctcagctacctccaccgtaccagtacatgcaatactctcagcatcctttcttcccaccattctatcaccagtatccgccaccgccgggt 27392912  T
Q  117 caacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagc 165  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  27392913 caacctcaggtacccgtcaatgccattgctcagcaaatgcaacaacagc 27392961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 23128968 - 23128856
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  23128968 cctccgtcatacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 23128869  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  23128868 atgcaatcgctca 23128856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 12655381 - 12655493
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||  ||||| ||||||||||||| ||||||||||    
T  12655381 cctccgtcctacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccccctgccaccgggtcaacctcaagtacccgtta 12655480  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  12655481 atgcaatcgctca 12655493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 28882053 - 28882165
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  28882053 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 28882152  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  28882153 atgcaatcgctca 28882165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 20837759 - 20837869
Alignment:
Q  38 tccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaat 137  Q
    |||||| ||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||  ||||| ||||||||||||| ||||||||||||    
T  20837759 tccgtcctacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccccctgccaccgggtcaacctcaagtacccgttaat 20837858  T
Q  138 gccattgctca 148  Q
    || || |||||    
T  20837859 gcaatcgctca 20837869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 11635543 - 11635482
Alignment:
Q  84 ccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 145  Q
    ||||| ||||||||||| ||| ||||| ||||||||||||| |||||||| ||||| |||||    
T  11635543 ccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgc 11635482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 11641732 - 11641671
Alignment:
Q  84 ccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 145  Q
    ||||| ||||||||||| ||| ||||| ||||||||||||| |||||||| ||||| |||||    
T  11641732 ccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgc 11641671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 32049685 - 32049749
Alignment:
Q  84 ccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||| ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| ||||||||    
T  32049685 ccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 32049749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 37925377 - 37925441
Alignment:
Q  81 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 145  Q
    ||||| || ||||||||||| ||||||||| ||||||||||||| || ||||| ||||| |||||    
T  37925377 ccaccgttttatcatcagtaccctttgccaccgggtcaacctcaagtgcccgtcaatgcgattgc 37925441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 21677542 - 21677475
Alignment:
Q  78 tttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 145  Q
    ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| |||||    
T  21677542 tttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcgattgc 21677475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 188
Target Start/End: Complemental strand, 13936904 - 13936794
Alignment:
Q  78 tttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaac 177  Q
    ||||| ||||| || |||||||| ||| ||||| ||||||||||||| || ||||| ||||| ||||| || || | | |||||||||  || | |||||    
T  13936904 tttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgcccaacagatgaaacaacagctgccggttcaac 13936805  T
Q  178 aacgacagcaa 188  Q
    ||| |||||||    
T  13936804 aacaacagcaa 13936794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 34279330 - 34279400
Alignment:
Q  78 tttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||| ||||| || |||||||| ||| ||||| ||||||||||||| || ||||| ||||| ||||||||    
T  34279330 tttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 34279400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 261122 - 261013
Alignment:
Q  81 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaac 180  Q
    ||||| || ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| ||||| || || | | ||||||||   |||| ||||||||    
T  261122 ccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgcccaacagatgaaacaacagttgccagttcaacaac 261023  T
Q  181 gacagcaaca 190  Q
     ||| |||||    
T  261022 aacaacaaca 261013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 37375000 - 37375112
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  |||||||||| | | || || || || || ||||||||||| ||||||||| |||| ||||||||||| || || |    
T  37375000 cctccgtcatacccatatgtgccgtactctcagcatccgttcttcccgccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtca 37375099  T
Q  136 atgccattgctca 148  Q
    ||| ||| |||||    
T  37375100 atgtcatcgctca 37375112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 9354444 - 9354619
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  9354444 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 9354543  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||||| | |  |||| || |||||||||||||||||||||||||||||||||    
T  9354544 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagca 9354619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 19659432 - 19659257
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  19659432 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 19659333  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||||| | |  |||| || ||||||||| |||||||||||||||||||||||    
T  19659332 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacaacctccagctcaacaacgacagca 19659257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 44562923 - 44563098
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||||||||||    
T  44562923 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctttgccat 44563022  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    |||| ||||||||||||||||||||||||   | ||||| || |||||||||||||||||||||||||||||||||    
T  44563023 cgggacaacctcaggtacccgttaatgccgccgttcagcgaatgcaacaacagcctccagctcaacaacgacagca 44563098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 16283292 - 16283404
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||||||||| |||||||  |||||||||| | | || ||||| |||||||||||| |||||||||||||| | |||||||||||||||||| |||    
T  16283292 cctccgtcgtacccatatgcgccgtactctcagcatcctttctttccgccattctatcattagtatcctttgccaccaggtcaacctcaggtacccatta 16283391  T
Q  136 atgccattgctca 148  Q
    |||| ||||||||    
T  16283392 atgcaattgctca 16283404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 22081263 - 22081114
Alignment:
Q  17 catcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat---cg 113  Q
    ||||||||||||||||||||||||| |||| | |||   |||||||||||||| | | || || |||||||| ||||| ||||||||   |||||   ||    
T  22081263 catcaatgctgctcagctacctccgccgtatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccg 22081167  T
Q  114 ggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcc 166  Q
    |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  22081166 ggtcaacctcaggtacccgtcaatgccattgctcagcaaatgcagcaacagcc 22081114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 19687923 - 19688053
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    ||||||||||| ||  | |||||||| ||||| |||||||  || || |||| | | || ||||| ||||||||||| ||||| ||| ||||| ||||||    
T  19687923 atcaatgctgcccaaatgcctccgtcatacccatatgcgccgtattcccagcatcctttctttccgccattctatcaccagtaccctctgccaccgggtc 19688022  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    ||||||| |||||||||||||| ||||||||    
T  19688023 aacctcaagtacccgttaatgcaattgctca 19688053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 16277397 - 16277509
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  16277397 cctccgtcatacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 16277496  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  16277497 atgcaatcgctca 16277509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 2137631 - 2137519
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||||||  || ||||||| | | || |||||  |||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  2137631 cctccgtcatacccatatgcgccgtattctcagcatcctttctttccgtcattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 2137532  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  2137531 atgcaatcgctca 2137519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 14557470 - 14557582
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  || ||||||| | |||| ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||| ||||    
T  14557470 cctccgtcatacccatatgtgccgtattctcagcatcccttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacctgtta 14557569  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  14557570 atgcaatcgctca 14557582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 18710411 - 18710541
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||| ||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  18710411 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 18710510  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    |||||||||| ||||| |||||  |||||||    
T  18710511 aacctcaggttcccgtcaatgcagttgctca 18710541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 19286290 - 19286420
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||| ||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||| ||| |||| |    
T  19286290 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttaccaccgggcc 19286389  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    |||||||||| || || ||||||||||||||    
T  19286390 aacctcaggttcctgtcaatgccattgctca 19286420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 27609235 - 27609165
Alignment:
Q  78 tttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| |||||||||||||| || |||||    
T  27609235 tttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 27609165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 31490140 - 31490013
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||| ||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| ||||||    
T  31490140 atcaatgcagctcaaatgcctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggtc 31490041  T
Q  118 aacctcaggtacccgttaatgccattgc 145  Q
    ||||||| || ||||| ||||| |||||    
T  31490040 aacctcaagtgcccgtcaatgcgattgc 31490013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 31354412 - 31354479
Alignment:
Q  81 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||| || ||||||||||| ||||||||| |||| ||||||||||| || || |||||||| |||||    
T  31354412 ccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtcaatgccatcgctca 31354479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 31088784 - 31088609
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  31088784 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 31088685  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||||| | |  |||| || |||||||||||||||||||||||||||||||||    
T  31088684 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagca 31088609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 45733283 - 45733458
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  45733283 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 45733382  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||||| | |  |||| || |||||||||||||||||||||||||||||||||    
T  45733383 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagca 45733458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 16041155 - 16041321
Alignment:
Q  21 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 120  Q
    |||||||| ||| |||||||||||||||| ||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  16041155 aatgctgcccagttacctccgtcgtacccatatgcgccatactctcagcatcccttctttccaccattctatcatcagtatcctttgtcatcgggtcaac 16041254  T
Q  121 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||| || | | |||||||| |||||||||||| |||| |||||||| ||||||    
T  16041255 ctcaggtacccgttaattccgtcgttcagcaaatgcaacaacagccaccagttcaacaacaacagca 16041321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 16450309 - 16450143
Alignment:
Q  21 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 120  Q
    |||||||| ||| ||||||||||||||||||| ||||| |||||||||| | |||| ||||||||||| |||||||||||||||||||||||||||||||    
T  16450309 aatgctgcccagttacctccgtcgtacccgtacgcgcagtactctcagcatcccttctttccaccattttatcatcagtatcctttgccatcgggtcaac 16450210  T
Q  121 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||| |||||||| | | |||||||  |||||||||||| ||||||||||| | ||||||    
T  16450209 ctcaggtacccattaatgccgtcgttcagcaagtgcaacaacagccaccagctcaacagcaacagca 16450143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 16503679 - 16503550
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||||||  |||||||||| | | || ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  16503679 cctccgtcatacccatatgcgccgtactctcagcatcctttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgtta 16503580  T
Q  136 atgccattgctcagcaaacgcaacaacagc 165  Q
    |||| |||||||| || | | |||||||||    
T  16503579 atgcaattgctcaacagatgaaacaacagc 16503550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 16518715 - 16518586
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||||||  |||||||||| | | || ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  16518715 cctccgtcatacccatatgcgccgtactctcagcatcctttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgtta 16518616  T
Q  136 atgccattgctcagcaaacgcaacaacagc 165  Q
    |||| |||||||| || | | |||||||||    
T  16518615 atgcaattgctcaacagatgaaacaacagc 16518586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 5127818 - 5127948
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||| ||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||||||| ||||| ||||||    
T  5127818 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtatcctctgccaccgggtc 5127917  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    ||||||| |||||||||||||| ||||||||    
T  5127918 aacctcaagtacccgttaatgcaattgctca 5127948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 5159348 - 5159478
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    ||||||||||||||| | || ||||| ||||| ||||| |  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  5159348 atcaatgctgctcagtttcccccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 5159447  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    |||||||||| || || |||||||| |||||    
T  5159448 aacctcaggtccctgtcaatgccatcgctca 5159478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 10917137 - 10917052
Alignment:
Q  63 tctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||||| | |||| ||||| ||||| ||||||||||||||| ||||| ||||||||||||| ||||| |||||||| || |||||    
T  10917137 tctcagcatcccttctttccgccattttatcatcagtatcctctgccaccgggtcaacctcaagtacctgttaatgcaatcgctca 10917052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 2154417 - 2154529
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||| ||||||    
T  2154417 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtatccgtta 2154516  T
Q  136 atgccattgctca 148  Q
    |||| ||||||||    
T  2154517 atgcaattgctca 2154529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 11425033 - 11424963
Alignment:
Q  78 tttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||| ||||| || |||||||| ||| ||||| ||||||||||||| |||||||||||||| || |||||    
T  11425033 tttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 11424963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 5147615 - 5147530
Alignment:
Q  60 tactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 145  Q
    |||||||||| | | || || ||||| || ||||||||||| ||| ||||| ||||||||||||| |||||||| ||||| |||||    
T  5147615 tactctcagcatccgttcttcccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgc 5147530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 26435125 - 26435210
Alignment:
Q  60 tactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 145  Q
    |||||||||| | | || || ||||| || ||||||||||| ||| ||||| ||||||||||||| |||||||| ||||| |||||    
T  26435125 tactctcagcatccgttcttcccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgc 26435210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 4145377 - 4145310
Alignment:
Q  81 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||| || ||||||||||| ||||||||| |||| ||||||||||| || || |||||||| |||||    
T  4145377 ccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtcaatgccatcgctca 4145310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 45387235 - 45387296
Alignment:
Q  84 ccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 145  Q
    ||||| ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| |||||    
T  45387235 ccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 45387296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 11441449 - 11441513
Alignment:
Q  81 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 145  Q
    ||||| || ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| |||||    
T  11441449 ccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 11441513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 4e-71; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 13522450 - 13522275
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  13522450 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 13522351  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||||| | |  |||| || |||||||||||||||||||||||||||||||||    
T  13522350 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagca 13522275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 33374633 - 33374458
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  33374633 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 33374534  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||||| | |  |||| || |||||||||||||||||||||||||||||||||    
T  33374533 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagca 33374458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 8892687 - 8892512
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||| |||||||||||| |||||||||    
T  8892687 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattatatcatcagtattctttgccat 8892588  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||||| | | ||||| || |||||||||||||||||||||||||||||||||    
T  8892587 cgggtcaacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagca 8892512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 8903922 - 8903747
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  ||| |||||||||||||||||||||||| |||||||||    
T  8903922 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatctcttctttccaccattctatcatcagtattctttgccat 8903823  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||||| | | ||||| || |||||||||||||||||||||||||||||||||    
T  8903822 cgggtcaacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagca 8903747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 28162477 - 28162651
Alignment:
Q  13 tggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatc 112  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||||||    
T  28162477 tggacatcaatgctgctcagctacctccatcgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctttgccatc 28162576  T
Q  113 gggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||| |||||||||||||||||||||||| | | ||||| || |||||||||||||||||||||||||||||||||    
T  28162577 gggacaacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagca 28162651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 22477644 - 22477501
Alignment:
Q  21 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 120  Q
    |||||||| ||  |||||| |||||||||||||||||| |||||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||    
T  22477644 aatgctgcccaattacctctgtcgtacccgtatgcgcagtactctcagcatcccttctttccaccattctatcattagtatcctttgccatcgggtcaac 22477545  T
Q  121 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacag 164  Q
    ||||||||||||||||||| |||||||| |||| ||||||||||    
T  22477544 ctcaggtacccgttaatgcaattgctcaacaaatgcaacaacag 22477501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 20160588 - 20160688
Alignment:
Q  80 tccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaa 179  Q
    ||||||||| || |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||  || |||||||| ||||||||||||    
T  20160588 tccaccattttaccatcagtatcctctaccaccgggtcaacctcaggtacccgttaatgccattgctcagcaaaaacagcaacagccaccagctcaacaa 20160687  T
Q  180 c 180  Q
    |    
T  20160688 c 20160688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 22172243 - 22172143
Alignment:
Q  80 tccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaa 179  Q
    ||||||||| || |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||  || |||||||| ||||||||||||    
T  22172243 tccaccattttaccatcagtatcctctaccaccgggtcaacctcaggtacccgttaatgccattgctcagcaaaaacagcaacagccaccagctcaacaa 22172144  T
Q  180 c 180  Q
    |    
T  22172143 c 22172143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 22935233 - 22935121
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||||||  || ||||| | | |||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| |    
T  22935233 cctccgtcatacccatatgcgccgtattctcaacatcccttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgtca 22935134  T
Q  136 atgccattgctca 148  Q
    |||| ||||||||    
T  22935133 atgcaattgctca 22935121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 23857678 - 23857566
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||||||  || ||||| | | |||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| |    
T  23857678 cctccgtcatacccatatgcgccgtattctcaacatcccttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgtca 23857579  T
Q  136 atgccattgctca 148  Q
    |||| ||||||||    
T  23857578 atgcaattgctca 23857566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 24304992 - 24304830
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    ||||||||||| ||  | |||||||| ||||| |||| ||  || ||||||| | |||| ||||| ||||| ||||||||||| ||| ||||| ||||||    
T  24304992 atcaatgctgcccaaatgcctccgtcatacccatatgtgccgtattctcagcatcccttctttccgccattttatcatcagtaccctctgccaccgggtc 24304893  T
Q  118 aacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaac 180  Q
    ||||||| |||||||||||||| || ||||| || | | ||||||||  ||||| ||||||||    
T  24304892 aacctcaagtacccgttaatgcaatcgctcaacagatgaaacaacagtttccagttcaacaac 24304830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 26918202 - 26918348
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||| ||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||    
T  26918202 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtc 26918301  T
Q  118 aacctcaggtacccgttaatgccattgctcagcaaacgcaacaacag 164  Q
    ||||||| |||||||| ||||| |||||||| || ||| ||||||||    
T  26918302 aacctcaagtacccgtcaatgcaattgctcaacagacgaaacaacag 26918348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 13299307 - 13299195
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  13299307 cctccgtcatacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 13299208  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  13299207 atgcaatcgctca 13299195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 15424673 - 15424561
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  15424673 cctccgtcatacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 15424574  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  15424573 atgcaatcgctca 15424561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 26999913 - 27000025
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  26999913 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 27000012  T
Q  136 atgccattgctca 148  Q
    |||| ||||||||    
T  27000013 atgcaattgctca 27000025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 24863557 - 24863669
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||||||  || ||||||| | | || ||||| ||||||||||||||||| ||| | ||| || ||||||| || ||||||||||    
T  24863557 cctccgtcctacccatatgcgccgtattctcagcatcctttctttccgccattctatcatcagtaccctctaccaccgagtcaaccccaagtacccgtta 24863656  T
Q  136 atgccattgctca 148  Q
    |||| ||||||||    
T  24863657 atgcaattgctca 24863669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 26988841 - 26988953
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  26988841 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 26988940  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  26988941 atgcaatcgctca 26988953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 16749695 - 16749806
Alignment:
Q  37 ctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaa 136  Q
    ||||||| ||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| |||||||||||    
T  16749695 ctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaa 16749794  T
Q  137 tgccattgctca 148  Q
    ||| || |||||    
T  16749795 tgcaatcgctca 16749806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 29549300 - 29549430
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||| ||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  29549300 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 29549399  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    |||||||||| || || |||||||| |||||    
T  29549400 aacctcaggttcctgtcaatgccatcgctca 29549430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 29501228 - 29501361
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || || ||||| || ||||||||||| ||||||||| | || |    
T  29501228 atcaatgcagctcaaatgcctccgtcgtacccatatatgccgtattctcagcatccattcttcccaccgttttatcatcagtaccctttgccacccggcc 29501327  T
Q  118 aacctcaggtacccgttaatgccattgctcagca 151  Q
    |||||||||| || || |||||||| ||||||||    
T  29501328 aacctcaggttcctgtcaatgccatcgctcagca 29501361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 4525174 - 4525241
Alignment:
Q  81 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||| || ||||||||||||||||||||| | || ||||||||||| || || |||||||| |||||    
T  4525174 ccaccgttttatcatcagtatcctttgccaccaggccaacctcaggttcctgtcaatgccatcgctca 4525241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 27044275 - 27044342
Alignment:
Q  81 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||| || ||||||||||| ||||||||| |||| ||||||||||| || || |||||||| |||||    
T  27044275 ccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtcaatgccatcgctca 27044342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 30558391 - 30558263
Alignment:
Q  17 catcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 116  Q
    ||||||||| |||||  | |||||||| ||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| ||||     
T  30558391 catcaatgcagctcaaatgcctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggc 30558292  T
Q  117 caacctcaggtacccgttaatgccattgc 145  Q
    || ||||| || ||||| ||||| |||||    
T  30558291 cagcctcaagtgcccgtcaatgcaattgc 30558263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 13184979 - 13184804
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  13184979 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 13184880  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||||| | |  |||| || |||||||||||||||||||||||||||||||||    
T  13184879 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagca 13184804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 13440825 - 13440650
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  13440825 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 13440726  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||||| | |  |||| || |||||||||||||||||||||||||||||||||    
T  13440725 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagca 13440650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 33877078 - 33877253
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  33877078 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 33877177  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||||| | |  |||| || |||||||||||||||||||||||||||||||||    
T  33877178 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagca 33877253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 11325625 - 11325800
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  11325625 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 11325724  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
     ||| |||||||||||||||||||||||| | | ||||| || |||||||||||||||||||||||||||||||||    
T  11325725 tgggacaacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagca 11325800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 22888310 - 22888476
Alignment:
Q  21 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 120  Q
    |||||||| ||| |||||||||||||||| ||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||    
T  22888310 aatgctgcccagttacctccgtcgtacccatatgcgccatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 22888409  T
Q  121 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    |||||||| ||||||||||| | | |||||||| |||||||||||| |||| |||||||| ||||||    
T  22888410 ctcaggtaaccgttaatgccgtcgttcagcaaatgcaacaacagccaccagttcaacaacaacagca 22888476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 36 - 187
Target Start/End: Original strand, 25198884 - 25199035
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||||||||| |||||||  |||||||||| | | || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25198884 cctccgtcgtacccatatgcgccgtactctcagcatcctttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtactcgtta 25198983  T
Q  136 atgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    | ||| | | |||||||| |||||||||||| |||| |||||||| ||||||    
T  25198984 acgccgtcgttcagcaaatgcaacaacagccaccagttcaacaacaacagca 25199035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 36 - 190
Target Start/End: Original strand, 23892058 - 23892212
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||||||||| |||||||  |||||||||| | | || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23892058 cctccgtcgtacccatatgcgccgtactctcagcatcctttctttccaacattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtca 23892157  T
Q  136 atgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcaaca 190  Q
    ||||||| | |||||||| |||||||||||| || | |||||||| ||| |||||    
T  23892158 atgccatcgttcagcaaatgcaacaacagccaccggttcaacaacaacaacaaca 23892212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 36 - 190
Target Start/End: Original strand, 24969876 - 24970030
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||||||||| |||||||  || ||||||| | | || ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  24969876 cctccgtcgtacccatatgcgccgtattctcagcatcctttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgtta 24969975  T
Q  136 atgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcaaca 190  Q
    |||| |||||||| || | | |||||||||  || | |||||||| ||| |||||    
T  24969976 atgcaattgctcaacagatgaaacaacagctgccggttcaacaacaacatcaaca 24970030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 24688467 - 24688355
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||||||  || ||||| | | | || ||||| ||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  24688467 cctccgtcatacccatatgcgccgtattctcaacatcctttctttccgccattctatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 24688368  T
Q  136 atgccattgctca 148  Q
    || | ||||||||    
T  24688367 atacaattgctca 24688355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 30934488 - 30934600
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  || ||||||| | |||| ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  30934488 cctccgtcatacccatatgtgccgtattctcagcatcccttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 30934587  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  30934588 atgcaatcgctca 30934600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 11549248 - 11549318
Alignment:
Q  78 tttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||||||||| ||||||||||| ||| ||||| ||||||||||||| |||||||||||||| || |||||    
T  11549248 tttccaccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 11549318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 33292362 - 33292492
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    ||||||||||||||| | || ||||| ||||| ||||| |  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  33292362 atcaatgctgctcagtttcccccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 33292461  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    |||||||||| || || |||||||| |||||    
T  33292462 aacctcaggtccctgtcaatgccatcgctca 33292492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 33777321 - 33777451
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||| ||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||    
T  33777321 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtc 33777420  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    ||||||| |||||||||||||| || |||||    
T  33777421 aacctcaagtacccgttaatgcaatcgctca 33777451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 23718298 - 23718186
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  23718298 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 23718199  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  23718198 atgcaatcgctca 23718186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 23752760 - 23752648
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  23752760 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 23752661  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  23752660 atgcaatcgctca 23752648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 22999424 - 22999312
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||  ||||||||||||| ||||||||||    
T  22999424 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccgccgggtcaacctcaagtacccgtta 22999325  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  22999324 atgcaatcgctca 22999312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 30168302 - 30168430
Alignment:
Q  17 catcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 116  Q
    ||||||||| |||||  | |||||||| ||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| |||||    
T  30168302 catcaatgcagctcaaatgcctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggt 30168401  T
Q  117 caacctcaggtacccgttaatgccattgc 145  Q
    |||||||| || ||||| ||||| |||||    
T  30168402 caacctcaagtgcccgtcaatgcaattgc 30168430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 9548811 - 9548741
Alignment:
Q  78 tttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||| ||||| || |||||||| ||| ||||| ||||||||||||| |||||||| ||||| ||||||||    
T  9548811 tttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgctca 9548741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 31431325 - 31431389
Alignment:
Q  81 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 145  Q
    ||||| || ||||||||||| ||| ||||| ||||||||||||| |||||||| ||||| |||||    
T  31431325 ccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgc 31431389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 3789360 - 3789487
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||| ||||| |||  ||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  3789360 atcaatgcagctcaaatgcctccgtcatacccatatatgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 3789459  T
Q  118 aacctcaggtacccgttaatgccattgc 145  Q
    | |||||||| ||||| ||||| |||||    
T  3789460 agcctcaggtgcccgtcaatgcaattgc 3789487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 32599734 - 32599664
Alignment:
Q  81 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctcagca 151  Q
    ||||| || ||||||||||| ||||||||| | || ||||||||||| || || |||||||| ||||||||    
T  32599734 ccaccgttttatcatcagtaccctttgccacccggccaacctcaggttcctgtcaatgccatcgctcagca 32599664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 18375741 - 18375613
Alignment:
Q  17 catcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 116  Q
    ||||||||| |||||  | |||||||| ||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| ||||     
T  18375741 catcaatgcagctcaaatgcctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggc 18375642  T
Q  117 caacctcaggtacccgttaatgccattgc 145  Q
    || ||||| || ||||| ||||| |||||    
T  18375641 cagcctcaagtgcccgtcaatgcaattgc 18375613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 18501013 - 18500949
Alignment:
Q  81 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 145  Q
    ||||| || ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| |||||    
T  18501013 ccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 18500949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 33516189 - 33516317
Alignment:
Q  17 catcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 116  Q
    ||||||||| |||||  | |||||||| ||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| ||||     
T  33516189 catcaatgcggctcaaatgcctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggc 33516288  T
Q  117 caacctcaggtacccgttaatgccattgc 145  Q
    || ||||| || ||||| ||||| |||||    
T  33516289 cagcctcaagtgcccgtcaatgcaattgc 33516317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 43078146 - 43078210
Alignment:
Q  81 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 145  Q
    ||||| || ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| |||||    
T  43078146 ccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 43078210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 17994259 - 17994084
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  17994259 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 17994160  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||||| | |  |||| || |||||||||||||||||||||||||||||||||    
T  17994159 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagca 17994084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 4625727 - 4625902
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||    
T  4625727 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattatatcatcagtatcctttgccat 4625826  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||| | | |  |||| || |||||||||||||||||||||||||||||||||    
T  4625827 cgggtcaacctcaggtacccgttaatgtcgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagca 4625902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 5652170 - 5652345
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||| ||||| ||    
T  5652170 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcgtttgcaat 5652269  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||||| | |  |||| || |||||||||||||||||||||||||||||||||    
T  5652270 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagca 5652345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 16626972 - 16626806
Alignment:
Q  21 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 120  Q
    |||||||| ||| |||||||||||||||||||||| ||||||||||||| | |||| |||||||| |||||||||||||||||| | |||||||||||||    
T  16626972 aatgctgcccagttacctccgtcgtacccgtatgcacaatactctcagcatcccttctttccaccgttctatcatcagtatcctctaccatcgggtcaac 16626873  T
Q  121 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||| |||||||||||||||||| | |||||||| |||||||||||| ||||||||||||| ||||||    
T  16626872 ctccggtacccgttaatgccatcgttcagcaaatgcaacaacagccaccagctcaacaacaacagca 16626806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 18530186 - 18530343
Alignment:
Q  21 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 120  Q
    |||||||| ||| ||||||| |||||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||| | |||||||||||||    
T  18530186 aatgctgcccagttacctccatcgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctctaccatcgggtcaac 18530285  T
Q  121 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaaca 178  Q
    |||| || |||||||||||| | | |||||||| |||||||||||| |||||||||||    
T  18530286 ctcaagtgcccgttaatgccgtcgttcagcaaatgcaacaacagccaccagctcaaca 18530343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 5713007 - 5713134
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||| |||||     
T  5713007 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtaccctctgccac 5713106  T
Q  112 cgggtcaacctcaggtacccgttaatgc 139  Q
    ||||||||||||| || ||||| |||||    
T  5713107 cgggtcaacctcaagtgcccgtcaatgc 5713134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 5723917 - 5724044
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||| |||||     
T  5723917 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtaccctctgccac 5724016  T
Q  112 cgggtcaacctcaggtacccgttaatgc 139  Q
    ||||||||||||| || ||||| |||||    
T  5724017 cgggtcaacctcaagtgcccgtcaatgc 5724044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 5757560 - 5757433
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||| |||||     
T  5757560 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtaccctctgccac 5757461  T
Q  112 cgggtcaacctcaggtacccgttaatgc 139  Q
    ||||||||||||| || ||||| |||||    
T  5757460 cgggtcaacctcaagtgcccgtcaatgc 5757433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 5768451 - 5768324
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||| |||||     
T  5768451 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtaccctctgccac 5768352  T
Q  112 cgggtcaacctcaggtacccgttaatgc 139  Q
    ||||||||||||| || ||||| |||||    
T  5768351 cgggtcaacctcaagtgcccgtcaatgc 5768324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 15893178 - 15893048
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    ||||||||||| ||  | |||||||||||||| |||||||  |||||||||| | | || ||||| || |||||||||||||| ||||||||| ||||||    
T  15893178 atcaatgctgcccaaatgcctccgtcgtacccatatgcgccgtactctcagcatcctttctttccgcccttctatcatcagtaccctttgccaccgggtc 15893079  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    ||||||| |||||||||||||| ||||||||    
T  15893078 aacctcaagtacccgttaatgcaattgctca 15893048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 8301736 - 8301606
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    ||||||||||| ||  | |||||||||||| | |||||||  || ||||||| | | || ||||| ||||||||||||||||| ||||||||| ||||||    
T  8301736 atcaatgctgcccaaatgcctccgtcgtactcatatgcgccgtattctcagcatcctttctttccgccattctatcatcagtaccctttgccaccgggtc 8301637  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    ||||||| |||||||||||||| ||||||||    
T  8301636 aacctcaagtacccgttaatgcaattgctca 8301606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 4797107 - 4796995
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  4797107 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 4797008  T
Q  136 atgccattgctca 148  Q
    |||| ||||||||    
T  4797007 atgcaattgctca 4796995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 18051066 - 18051178
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||||||  || ||||| | | | || ||||| ||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  18051066 cctccgtcatacccatatgcgccgtattctcaacatcctttctttccgccattctatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 18051165  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  18051166 atgcaatcgctca 18051178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 4892999 - 4893129
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    ||||||||||||||| | || ||||| ||||| ||||| |  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  4892999 atcaatgctgctcagtttcccccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 4893098  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    |||||||||| || || |||||||| |||||    
T  4893099 aacctcaggtccctgtcaatgccatcgctca 4893129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 8211527 - 8211657
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||| ||||| |||||||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  8211527 atcaatgcagctcaaatgcctccgtcatacccatatgcgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 8211626  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    |||||||||| || || |||||||| |||||    
T  8211627 aacctcaggttcctgtcaatgccatcgctca 8211657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 22388047 - 22387917
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    ||||||||||||||| | || ||||| ||||| ||||| | ||||||||||| | | || || ||| | || ||||||||||| ||||||||| |||| |    
T  22388047 atcaatgctgctcagtttcccccgtcctacccttatgcaccatactctcagcatccgttcttcccatcgttttatcatcagtaccctttgccaccgggcc 22387948  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    |||||||||| || || |||||||| |||||    
T  22387947 aacctcaggtccctgtcaatgccatcgctca 22387917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 35880552 - 35880682
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||| ||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||    
T  35880552 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtc 35880651  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    ||||||| |||||||||||||| || |||||    
T  35880652 aacctcaagtacccgttaatgcaatcgctca 35880682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 32438944 - 32439073
Alignment:
Q  19 tcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtca 118  Q
    |||||||||||||| | || ||||| ||||| ||||| |  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| ||    
T  32438944 tcaatgctgctcagtttcccccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcca 32439043  T
Q  119 acctcaggtacccgttaatgccattgctca 148  Q
    ||||||||| || || |||||||| |||||    
T  32439044 acctcaggtccctgtcaatgccatcgctca 32439073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 15741536 - 15741424
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  15741536 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 15741437  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  15741436 atgcaatcgctca 15741424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 4721477 - 4721547
Alignment:
Q  78 tttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| |||||||| ||||| ||||||||    
T  4721477 tttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgctca 4721547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 8295779 - 8295891
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||| || || ||||||||||||| ||||| ||||    
T  8295779 cctccgtcatacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgtcaccgggtcaacctcaagtacctgtta 8295878  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  8295879 atgcaatcgctca 8295891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 18277506 - 18277394
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| ||||||||||| || || |    
T  18277506 cctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtca 18277407  T
Q  136 atgccattgctca 148  Q
    ||||||| |||||    
T  18277406 atgccatcgctca 18277394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 18292807 - 18292695
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| ||||||||||| || || |    
T  18292807 cctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtca 18292708  T
Q  136 atgccattgctca 148  Q
    ||||||| |||||    
T  18292707 atgccatcgctca 18292695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 18308108 - 18307996
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| ||||||||||| || || |    
T  18308108 cctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtca 18308009  T
Q  136 atgccattgctca 148  Q
    ||||||| |||||    
T  18308008 atgccatcgctca 18307996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 20065850 - 20065962
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||||||||| |||| ||||||||||| || || |    
T  20065850 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctttgccaccgggccaacctcaggttcctgtca 20065949  T
Q  136 atgccattgctca 148  Q
    ||||||| |||||    
T  20065950 atgccatcgctca 20065962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 29149209 - 29149097
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  || ||||||| | | || || ||||| || ||||||||||| ||||||||| ||||||||||||| || |||||||    
T  29149209 cctccgtcatacccatatgtgccgtattctcagcatcctttcttcccaccgttttatcatcagtaccctttgccaccgggtcaacctcaagtgcccgtta 29149110  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  29149109 atgcaatcgctca 29149097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 6192102 - 6192232
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||| ||||| |||| ||  || ||||||| | | || ||| | ||||| |||||| |||| ||| ||||| ||||||    
T  6192102 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtattctcagcatcctttcttttcgccattttatcattagtaccctctgccaccgggtc 6192201  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    ||||||| |||||||| ||||| ||||||||    
T  6192202 aacctcaagtacccgtcaatgcaattgctca 6192232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 10395982 - 10396052
Alignment:
Q  78 tttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||| ||||| ||||||||||| ||||||||| |||| ||||||||||| || || |||||||| |||||    
T  10395982 tttccgccattttatcatcagtaccctttgccaccgggccaacctcaggttcctgtcaatgccatcgctca 10396052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 5596838 - 5596705
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || || ||||| || ||||||||||| ||||||||| | || |    
T  5596838 atcaatgcagctcaaatgcctccgtcgtacccatatatgccgtattctcagcatccattcttcccaccgttttatcatcagtaccctttgccacccggcc 5596739  T
Q  118 aacctcaggtacccgttaatgccattgctcagca 151  Q
    |||||||||| || || |||||||| ||||||||    
T  5596738 aacctcaggttcctgtcaatgccatcgctcagca 5596705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 28116363 - 28116302
Alignment:
Q  84 ccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 145  Q
    ||||| ||||||||||| ||| ||||| ||||||||||||| |||||||| ||||| |||||    
T  28116363 ccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgc 28116302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 29665415 - 29665330
Alignment:
Q  60 tactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 145  Q
    |||||||||| | | || || ||||| || ||||||||||| ||||||||| ||||||||||||| || ||||| ||||| |||||    
T  29665415 tactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 29665330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 7996414 - 7996478
Alignment:
Q  84 ccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||| ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| ||||||||    
T  7996414 ccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 7996478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 10642922 - 10642986
Alignment:
Q  84 ccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||| ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| ||||||||    
T  10642922 ccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 10642986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 47023302 - 47023366
Alignment:
Q  81 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 145  Q
    ||||| || ||||||||||| ||| ||||| |||||||||||||||| ||||| ||||| |||||    
T  47023302 ccaccgttttatcatcagtaccctctgccaccgggtcaacctcaggtgcccgtcaatgcaattgc 47023366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 5466834 - 5466901
Alignment:
Q  81 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    |||||||| ||||||||||| ||||||||| | || ||||||||||| || || |||||||| |||||    
T  5466834 ccaccattttatcatcagtaccctttgccacccggccaacctcaggttcctgtcaatgccatcgctca 5466901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 7073058 - 7073128
Alignment:
Q  78 tttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||| ||||| || |||||||| ||| ||||| ||||||||||||| || ||||| ||||| ||||||||    
T  7073058 tttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 7073128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 18330460 - 18330585
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||| ||||| |||| ||  || ||||||| | | || ||||||||||| |||||||     ||| ||||| ||||||    
T  18330460 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtattctcagcatcctttctttccaccattttatcatc-----cctctgccaccgggtc 18330554  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    ||||||| |||||||||||||| || |||||    
T  18330555 aacctcaagtacccgttaatgcaatcgctca 18330585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 11110770 - 11110706
Alignment:
Q  81 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 145  Q
    ||||| || ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| |||||    
T  11110770 ccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 11110706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 17985429 - 17985301
Alignment:
Q  17 catcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 116  Q
    ||||||||| |||||  | |||||||| ||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| ||||     
T  17985429 catcaatgcagctcaaatgcctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggc 17985330  T
Q  117 caacctcaggtacccgttaatgccattgc 145  Q
    || ||||| || ||||| ||||| |||||    
T  17985329 cagcctcaagtgcccgtcaatgcaattgc 17985301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 132; Significance: 9e-69; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 3092 - 2917
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  3092 atggacatcaatgctgctcagctacctccgtcgtacccgtacgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 2993  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    |||||||||||||||||||||| |||||| | | ||| |||| |||||||||||||||||||||||||| ||||||    
T  2992 cgggtcaacctcaggtacccgtcaatgccgtcgttcaacaaatgcaacaacagcctccagctcaacaacaacagca 2917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 9e-69; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 24461039 - 24460864
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| |||||||||||||||||||||||| |||||||||    
T  24461039 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtattctttgccat 24460940  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||||||||||||||||||||||||| | |  |||| || |||||||||||||||||||||||||||||||||    
T  24460939 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagca 24460864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 15227716 - 15227882
Alignment:
Q  21 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 120  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  15227716 aatgctgcccagttacctccgtcgtacccgtatgcgcaatactctcagcatcccttctttccaccattctatcatcaatatcctttgccatcgggtcaac 15227815  T
Q  121 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    |||||||||||||||||||  | | |||||||| |||||||||||| ||||||||||||| ||||||    
T  15227816 ctcaggtacccgttaatgctgtcgttcagcaaatgcaacaacagccaccagctcaacaacaacagca 15227882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 1900103 - 1900260
Alignment:
Q  21 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 120  Q
    |||||||| ||| |||||||||||||||| ||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||    
T  1900103 aatgctgcccagttacctccgtcgtacccatatgcgccatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 1900202  T
Q  121 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaaca 178  Q
    |||||||||||||||||||| | | |||||||| |||||||||||| |||| ||||||    
T  1900203 ctcaggtacccgttaatgccgtcgttcagcaaatgcaacaacagccaccagttcaaca 1900260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 15285353 - 15285187
Alignment:
Q  21 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 120  Q
    |||||||| ||| ||||||| | |||||| ||||||||||||||||||| | | || ||||||||||||||||||||||||||| | |||||||||||||    
T  15285353 aatgctgcccagttacctccattgtacccatatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctctaccatcgggtcaac 15285254  T
Q  121 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    ||||||| |||||||||||||| | |||||||| |||||||||||| ||| ||||||||| ||||||    
T  15285253 ctcaggtgcccgttaatgccatcgttcagcaaatgcaacaacagccaccaactcaacaacaacagca 15285187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 14235953 - 14235787
Alignment:
Q  21 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 120  Q
    |||||||||||| |||||| | |||||| ||||  |||||||||||||| | | || || |||||||||||||||||||| ||| | ||||||||||| |    
T  14235953 aatgctgctcagttacctctgccgtaccagtatatgcaatactctcagcatcctttcttcccaccattctatcatcagtaccctctaccatcgggtcacc 14235854  T
Q  121 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    |  |||||||||||||||||||||||||||||| |||||||||||| || ||||| |||| ||||||    
T  14235853 cataggtacccgttaatgccattgctcagcaaatgcaacaacagccgccggctcagcaacaacagca 14235787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 15391764 - 15391591
Alignment:
Q  17 catcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat---cg 113  Q
    |||||||| |||||||||||||||| |||| | |||   |||||||||||||| | | || || |||||||| ||||| ||||||||   |||||   ||    
T  15391764 catcaatgttgctcagctacctccgccgtatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccg 15391668  T
Q  114 ggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcaaca 190  Q
    |||||||||||||||||| | ||||||||||||||||||| ||| |||||||| |  ||||||||||  ||||||||    
T  15391667 ggtcaacctcaggtacccatcaatgccattgctcagcaaatgcagcaacagccgctggctcaacaacagcagcaaca 15391591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 17013858 - 17013970
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    ||||| || ||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  17013858 cctccttcatacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 17013957  T
Q  136 atgccattgctca 148  Q
    |||| ||||||||    
T  17013958 atgcaattgctca 17013970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 14664858 - 14664988
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    ||||||||||| ||  | |||||||| ||||| ||||| |  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||    
T  14664858 atcaatgctgcccaaatgcctccgtcatacccatatgcaccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtc 14664957  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    ||||||| |||||||||||||| || |||||    
T  14664958 aacctcaagtacccgttaatgcaatcgctca 14664988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 24592742 - 24592612
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||| ||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||    
T  24592742 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtc 24592643  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    ||||||| |||||||||||||| || |||||    
T  24592642 aacctcaagtacccgttaatgcaatcgctca 24592612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 34189388 - 34189258
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    ||||||||||||||| | || ||||| ||||| ||||| |  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  34189388 atcaatgctgctcagtttcccccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 34189289  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    |||||||||| || || |||||||| |||||    
T  34189288 aacctcaggtccctgtcaatgccatcgctca 34189258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 24112506 - 24112635
Alignment:
Q  19 tcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtca 118  Q
    |||||||||||||| | || ||||| ||||| ||||| |  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| ||    
T  24112506 tcaatgctgctcagtttcccccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcca 24112605  T
Q  119 acctcaggtacccgttaatgccattgctca 148  Q
    ||||||||| || || |||||||| |||||    
T  24112606 acctcaggtccctgtcaatgccatcgctca 24112635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 54833230 - 54833360
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||| ||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||| ||| |||| |    
T  54833230 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttaccaccgggcc 54833329  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    |||||||||| || || ||||||||||||||    
T  54833330 aacctcaggttcctgtcaatgccattgctca 54833360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 14763717 - 14763605
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| ||||||||||| || || |    
T  14763717 cctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtca 14763618  T
Q  136 atgccattgctca 148  Q
    ||||||| |||||    
T  14763617 atgccatcgctca 14763605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 36344925 - 36344813
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||| ||  |||||||||| | | || || | ||| || ||||||||||||||||||||| |||| ||||||||||| || || |    
T  36344925 cctccgtcatacccatatgtgccgtactctcagcatccgttcttcctaccgttttatcatcagtatcctttgccaccgggccaacctcaggttcctgtca 36344826  T
Q  136 atgccattgctca 148  Q
    ||||||| |||||    
T  36344825 atgccatcgctca 36344813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 6569753 - 6569820
Alignment:
Q  78 tttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 145  Q
    ||||| ||||| || |||||||| ||| ||||| ||||||||||||| |||||||||||||| |||||    
T  6569753 tttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaattgc 6569820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 5005776 - 5005837
Alignment:
Q  84 ccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 145  Q
    ||||| ||||||||||| ||| ||||| ||||||||||||| |||||||| ||||| |||||    
T  5005776 ccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgc 5005837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 27163682 - 27163618
Alignment:
Q  84 ccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||| ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| ||||||||    
T  27163682 ccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 27163618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 21969613 - 21969671
Alignment:
Q  90 tatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| ||||||||    
T  21969613 tatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 21969671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 19373101 - 19373202
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||| ||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| ||||||    
T  19373101 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggtc 19373200  T
Q  118 aa 119  Q
    ||    
T  19373201 aa 19373202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 9e-69; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 20340769 - 20340594
Alignment:
Q  12 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 111  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  20340769 atggacatcaatgctgctcagctacctccgtcgtacccgtacgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 20340670  T
Q  112 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 187  Q
    |||||||||||||||||||||| |||||| | | ||| |||| |||||||||||||||||||||||||| ||||||    
T  20340669 cgggtcaacctcaggtacccgtcaatgccgtcgttcaacaaatgcaacaacagcctccagctcaacaacaacagca 20340594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 20460935 - 20461079
Alignment:
Q  21 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 120  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||||||| | | || |||||||||||||||||||| |||||| | |||||||||||||    
T  20460935 aatgctgcccagttacctccgccgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcaatatcctctaccatcgggtcaac 20461034  T
Q  121 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagc 165  Q
    |||||||||||||||||||||| | |||||||| |||||||||||    
T  20461035 ctcaggtacccgttaatgccatcgttcagcaaatgcaacaacagc 20461079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 16208453 - 16208284
Alignment:
Q  21 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 120  Q
    |||||||| ||| |||||||| |||| | |||   |||||||||||||| | | || || |||||||||||||| ||||||||    ||||||||||| |    
T  16208453 aatgctgcccagttacctccgccgtatcagtacatgcaatactctcagcatcctttcttcccaccattctatcaccagtatccaccaccatcgggtcagc 16208354  T
Q  121 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcaaca 190  Q
    ||||||||||| |||||||||| | |||||||| |||||||||||| |||| |||||||| ||| |||||    
T  16208353 ctcaggtacccattaatgccatcgttcagcaaatgcaacaacagccaccagttcaacaacaacatcaaca 16208284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 41793673 - 41793610
Alignment:
Q  84 ccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctc 147  Q
    ||||| ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| |||||||    
T  41793673 ccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctc 41793610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 20240 - 20384
Alignment:
Q  21 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 120  Q
    |||||||| ||| |||||||||||||||| ||||||| ||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||||||||    
T  20240 aatgctgcccagttacctccgtcgtacccatatgcgccatactctcagcatcccttctttccatcattctatcatcagtatcctttgccatcgggtcaac 20339  T
Q  121 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagc 165  Q
    |||||||||||||||||||| | | |||||||| |||||||||||    
T  20340 ctcaggtacccgttaatgccgtcgttcagcaaatgcaacaacagc 20384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 30296 - 30408
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||||||  || ||||||| | |||| ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  30296 cctccgtcatacccatatgcgccgtattctcagcatcccttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 30395  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  30396 atgcaatcgctca 30408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 21391 - 21539
Alignment:
Q  17 catcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 116  Q
    |||||||||| |||||||||||||| |||||| |||   |||||||||||||| | | || || |||||||||||||| ||||||||    ||  |||||    
T  21391 catcaatgcttctcagctacctccgccgtaccagtacatgcaatactctcagcatcctttcttcccaccattctatcaccagtatccaccaccgccgggt 21490  T
Q  117 caacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagc 165  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  21491 caacctcaggtacccgtcaatgccattgctcagcaaatgcaacaacagc 21539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 29606 - 29718
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    ||||| ||||||||||||||||  || ||||||| | | || ||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  29606 cctccatcgtacccgtatgcgccgtattctcagcatcctttctttccgccattctatcatcagtaccctttgccaccgggtcaacctcaagtacccgtta 29705  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  29706 atgcaatagctca 29718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 40482 - 40370
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||| ||||||| |||||||  || ||||||| | | || ||||  ||||||||||||||||| ||||||||| |||||||||||||||||||||| |    
T  40482 cctccgccgtacccatatgcgccgtattctcagcatcctttctttctgccattctatcatcagtaccctttgccaccgggtcaacctcaggtacccgtaa 40383  T
Q  136 atgccattgctca 148  Q
    |||| ||||||||    
T  40382 atgcaattgctca 40370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 47356 - 47286
Alignment:
Q  78 tttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||| ||||| ||||||||||| ||  ||||| ||||||||||||| |||||||||||||| || |||||    
T  47356 tttccgccattttatcatcagtaccccctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 47286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 561 - 431
Alignment:
Q  18 atcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 117  Q
    |||||||| |||||  | |||||||| ||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||    
T  561 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtc 462  T
Q  118 aacctcaggtacccgttaatgccattgctca 148  Q
    ||||||| |||||||||||||| ||||||||    
T  461 aacctcaagtacccgttaatgcaattgctca 431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 27135 - 27247
Alignment:
Q  36 cctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 135  Q
    |||||||| ||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||| | ||| ||||||||||||| ||||||||||    
T  27135 cctccgtcatacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctaccaccgggtcaacctcaagtacccgtta 27234  T
Q  136 atgccattgctca 148  Q
    |||| || |||||    
T  27235 atgcaatcgctca 27247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0336 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 8120 - 8187
Alignment:
Q  81 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 148  Q
    ||||| || ||||||||||||||||||||| | || ||||||||||| || || |||||||| |||||    
T  8120 ccaccgttttatcatcagtatcctttgccaccaggccaacctcaggttcctgtcaatgccatcgctca 8187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 15362 - 15234
Alignment:
Q  17 catcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 116  Q
    ||||||||| |||||  | |||||||| ||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| ||||     
T  15362 catcaatgcagctcaaatgcctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggc 15263  T
Q  117 caacctcaggtacccgttaatgccattgc 145  Q
    || ||||| || ||||| ||||| |||||    
T  15262 cagcctcaagtgcccgtcaatgcaattgc 15234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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