View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_314 (Length: 207)
Name: NF9361A_low_314
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_314 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 49 - 201
Target Start/End: Complemental strand, 37575651 - 37575499
Alignment:
| Q |
49 |
aagactagggggacagaatacttggaaagtgggaagtcactcagacttgacaatgggattgaattccgattattggaaaatggcctacaaaggagaacaa |
148 |
Q |
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| T |
37575651 |
aagactagggggacagaatacttggaaagtgggatgtcactcagacttgacaatgggattgaattccgattattggaaaatggcctacaaaggagaacaa |
37575552 |
T |
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| Q |
149 |
tacgctgggattagaatttacataaccataataaagccaagtagaaagaaatt |
201 |
Q |
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| T |
37575551 |
tacgctgggattagaatttacataaccataataaagccaagtagaaagaaatt |
37575499 |
T |
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Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 10438696 - 10438568
Alignment:
| Q |
67 |
tacttggaaagtgggaagtcactcagacttgacaatgggattgaattccgattattggaaaatggcctacaaaggagaacaatacgctgggattagaatt |
166 |
Q |
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| T |
10438696 |
tacttggaaagagggatgtgacgcaaacttgacaatgggattgatttccgactattgaaaaatgaactgcaaaggacaacaacaagatggatttagaatt |
10438597 |
T |
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| Q |
167 |
tacataaccataataaagccaagtagaaa |
195 |
Q |
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| T |
10438596 |
gacataaccataataaagtgaagtagaaa |
10438568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 23491 - 23601
Alignment:
| Q |
71 |
tggaaagtgggaagtcactcagacttgacaatgggattgaattccgattattggaaaatggcctacaaaggagaacaatacgctgggattagaatttaca |
170 |
Q |
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| T |
23491 |
tggaaagagggatgtcacacaaacttgactatgggattgatttccgactattgaaaaatgacctacaaaggacaacaa---gatgggtttagaattgaca |
23587 |
T |
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| Q |
171 |
taaccataataaag |
184 |
Q |
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| T |
23588 |
taaccataataaag |
23601 |
T |
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