View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_32 (Length: 424)
Name: NF9361A_low_32
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 14 - 410
Target Start/End: Complemental strand, 2906392 - 2905996
Alignment:
| Q |
14 |
gatggacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaa |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906392 |
gatgaacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaa |
2906293 |
T |
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| Q |
114 |
aatccccttctcattcccctattggtggtggcggtggagagcgtcgcgttcaattcggcacagttgtggaggtgggagatgaatttggtggcggcagcga |
213 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906292 |
aatccccttctcattcccctgttggtggcggcggtggagagcgtcgtgttcaattcggcacagttgtggaggtgggagatgaatttggtggcggcagcga |
2906193 |
T |
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| Q |
214 |
ggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacattagtctaga |
313 |
Q |
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| T |
2906192 |
ggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacactagtctaga |
2906093 |
T |
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| Q |
314 |
taaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
410 |
Q |
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| T |
2906092 |
taaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
2905996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 410
Target Start/End: Complemental strand, 2854364 - 2853968
Alignment:
| Q |
14 |
gatggacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaa |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854364 |
gatgaacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaa |
2854265 |
T |
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| Q |
114 |
aatccccttctcattcccctattggtggtggcggtggagagcgtcgcgttcaattcggcacagttgtggaggtgggagatgaatttggtggcggcagcga |
213 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||| |||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2854264 |
aatccccttctcattcccctgttggtggtggcggtgaggagtgtcgggttcaatttggcacagttgtggagatgggagatgaatttggtggcggcagcga |
2854165 |
T |
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| Q |
214 |
ggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacattagtctaga |
313 |
Q |
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| T |
2854164 |
ggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacactagtctaga |
2854065 |
T |
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| Q |
314 |
taaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854064 |
taaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
2853968 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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