View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_322 (Length: 204)
Name: NF9361A_low_322
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_322 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 6915543 - 6915378
Alignment:
| Q |
20 |
aaaatcacccttccgaatgacgccctcataaactcttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggccca |
119 |
Q |
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| T |
6915543 |
aaaatcacccttccgaatgacaccctcataaactcttagatatgttaactgaccaaacttcgtttgctccaacttgaaagccaatgctacaagaggccca |
6915444 |
T |
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| Q |
120 |
tcgggacttccagtcagctgaaccttctcctcattcttggattggtcaagagcataattactaact |
185 |
Q |
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| T |
6915443 |
tcgggacttccagtcagctgaaccttctcctcattcttggattggtcaagagcataattactaact |
6915378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 10543505 - 10543546
Alignment:
| Q |
141 |
accttctcctcattcttggattggtcaagagcataattacta |
182 |
Q |
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| T |
10543505 |
accttttcctcattcttggattggacgagagcataattacta |
10543546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 8e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 15043971 - 15044061
Alignment:
| Q |
54 |
cttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaacct |
144 |
Q |
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| T |
15043971 |
cttaaatatgttagctgaccaaacttactttcctccaacttgaaagccaatgctacaaggggcccatcaggattaccaggcagctcaacct |
15044061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 15043819 - 15043854
Alignment:
| Q |
21 |
aaatcacccttccgaatgacgccctcataaactctt |
56 |
Q |
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| T |
15043819 |
aaatcacccttccgaatgacgccctcataaattctt |
15043854 |
T |
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