View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_324 (Length: 204)
Name: NF9361A_low_324
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_324 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 51299398 - 51299242
Alignment:
| Q |
42 |
ccactgaaaacttggaaataacttgaggtcaccattacaactaaggctccacatgaaagagccatatatgcacaactaactaaagatgtcaaaagaaaga |
141 |
Q |
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| T |
51299398 |
ccactgaaaacttggaaataacttgaggtcaccatttcaactaaggctccacatgaaagagcc----atgcacaactaactaaagatgtcaaaagaaaga |
51299303 |
T |
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| Q |
142 |
ataccnnnnnnnngagaagaatgttcccatcaatttagatggctctaattccatctagctg |
202 |
Q |
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| T |
51299302 |
ataccaaaaaaaagaaaagaatgttcctatcaatttagatggctctaattccatctagctg |
51299242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 51299455 - 51299417
Alignment:
| Q |
10 |
attatactgtctctcttattcacctccatctcccactga |
48 |
Q |
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| T |
51299455 |
attattctgtctctcttattcacctccatctccaactga |
51299417 |
T |
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