View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361A_low_325 (Length: 203)

Name: NF9361A_low_325
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361A_low_325
NF9361A_low_325
[»] scaffold0692 (1 HSPs)
scaffold0692 (80-182)||(3265-3367)
[»] scaffold0225 (1 HSPs)
scaffold0225 (80-182)||(24208-24310)
[»] scaffold0076 (1 HSPs)
scaffold0076 (80-182)||(41072-41174)
[»] chr7 (14 HSPs)
chr7 (80-182)||(27107170-27107272)
chr7 (80-182)||(7824672-7824774)
chr7 (80-181)||(45147325-45147426)
chr7 (89-181)||(17924424-17924516)
chr7 (84-181)||(21673933-21674030)
chr7 (82-181)||(14937120-14937219)
chr7 (82-181)||(15364713-15364812)
chr7 (80-182)||(4440700-4440802)
chr7 (84-182)||(13455519-13455617)
chr7 (106-179)||(23642223-23642296)
chr7 (80-178)||(13353926-13354024)
chr7 (80-164)||(17144657-17144741)
chr7 (137-182)||(6414284-6414329)
chr7 (153-182)||(26118052-26118081)
[»] chr6 (12 HSPs)
chr6 (80-182)||(16381905-16382007)
chr6 (80-182)||(1648346-1648448)
chr6 (80-178)||(14624889-14624987)
chr6 (80-182)||(16233675-16233777)
chr6 (80-182)||(23996895-23996997)
chr6 (80-181)||(18572299-18572400)
chr6 (80-181)||(21927853-21927954)
chr6 (80-182)||(23027248-23027350)
chr6 (80-181)||(18837440-18837541)
chr6 (80-182)||(15077898-15078000)
chr6 (80-181)||(16098698-16098799)
chr6 (89-182)||(14381008-14381101)
[»] chr5 (8 HSPs)
chr5 (80-182)||(21936757-21936859)
chr5 (80-182)||(24581907-24582009)
chr5 (80-182)||(23504139-23504241)
chr5 (80-181)||(27011782-27011883)
chr5 (80-181)||(19566258-19566359)
chr5 (80-167)||(25243919-25244006)
chr5 (80-167)||(25308071-25308158)
chr5 (89-182)||(20822150-20822243)
[»] chr3 (13 HSPs)
chr3 (80-182)||(30138218-30138320)
chr3 (80-182)||(30147769-30147871)
chr3 (80-182)||(13966966-13967068)
chr3 (80-182)||(16257556-16257658)
chr3 (80-182)||(16742329-16742431)
chr3 (80-182)||(6152477-6152579)
chr3 (84-182)||(8274029-8274127)
chr3 (80-182)||(17193506-17193608)
chr3 (80-181)||(6712035-6712136)
chr3 (80-181)||(18749078-18749179)
chr3 (80-144)||(15610554-15610618)
chr3 (80-165)||(15095434-15095519)
chr3 (80-179)||(266921-267020)
[»] chr2 (10 HSPs)
chr2 (80-182)||(24831114-24831216)
chr2 (84-182)||(12640164-12640262)
chr2 (80-182)||(23816970-23817072)
chr2 (83-182)||(22761499-22761598)
chr2 (80-181)||(24569595-24569696)
chr2 (80-182)||(22276692-22276794)
chr2 (80-181)||(25129062-25129163)
chr2 (80-179)||(21906096-21906195)
chr2 (153-182)||(11357874-11357903)
chr2 (89-182)||(19651988-19652081)
[»] chr1 (5 HSPs)
chr1 (80-182)||(20830851-20830953)
chr1 (80-181)||(22135016-22135117)
chr1 (89-181)||(21201757-21201849)
chr1 (89-182)||(19855103-19855196)
chr1 (153-182)||(37677878-37677907)
[»] scaffold0567 (1 HSPs)
scaffold0567 (80-182)||(10108-10210)
[»] scaffold0077 (1 HSPs)
scaffold0077 (80-182)||(27656-27758)
[»] chr8 (15 HSPs)
chr8 (80-182)||(23156842-23156944)
chr8 (84-182)||(16876929-16877027)
chr8 (80-182)||(21850167-21850269)
chr8 (80-182)||(22983282-22983384)
chr8 (84-181)||(20652167-20652264)
chr8 (80-182)||(21196332-21196434)
chr8 (80-181)||(22316041-22316142)
chr8 (80-182)||(25282979-25283081)
chr8 (80-182)||(25283205-25283307)
chr8 (89-168)||(23901138-23901217)
chr8 (80-182)||(22366495-22366597)
chr8 (90-182)||(22283853-22283945)
chr8 (130-182)||(22365694-22365746)
chr8 (80-117)||(21043359-21043396)
chr8 (153-182)||(29303329-29303358)
[»] chr4 (8 HSPs)
chr4 (80-182)||(15292545-15292647)
chr4 (80-181)||(13248429-13248530)
chr4 (80-181)||(9291619-9291720)
chr4 (80-181)||(14998100-14998201)
chr4 (80-174)||(38811698-38811792)
chr4 (80-182)||(12342252-12342353)
chr4 (89-182)||(20891765-20891858)
chr4 (153-182)||(44661326-44661355)
[»] scaffold0162 (1 HSPs)
scaffold0162 (80-181)||(13723-13824)
[»] scaffold0091 (1 HSPs)
scaffold0091 (80-181)||(45312-45413)
[»] scaffold0011 (1 HSPs)
scaffold0011 (80-181)||(180739-180840)
[»] scaffold0047 (1 HSPs)
scaffold0047 (80-182)||(463-565)
[»] scaffold0310 (1 HSPs)
scaffold0310 (80-181)||(14127-14228)
[»] scaffold0302 (1 HSPs)
scaffold0302 (80-181)||(5990-6091)
[»] scaffold0266 (1 HSPs)
scaffold0266 (80-181)||(9251-9352)
[»] scaffold0207 (1 HSPs)
scaffold0207 (80-181)||(18862-18963)
[»] scaffold0028 (1 HSPs)
scaffold0028 (80-181)||(105963-106064)
[»] scaffold0023 (1 HSPs)
scaffold0023 (80-181)||(55290-55391)
[»] scaffold0808 (1 HSPs)
scaffold0808 (80-182)||(444-546)
[»] scaffold0021 (3 HSPs)
scaffold0021 (84-178)||(24781-24875)
scaffold0021 (80-169)||(72016-72105)
scaffold0021 (78-169)||(32801-32892)
[»] scaffold0876 (1 HSPs)
scaffold0876 (80-181)||(3357-3458)
[»] scaffold0132 (2 HSPs)
scaffold0132 (80-181)||(15471-15572)
scaffold0132 (126-182)||(44352-44408)
[»] scaffold0066 (1 HSPs)
scaffold0066 (80-181)||(46969-47070)
[»] scaffold0008 (2 HSPs)
scaffold0008 (80-181)||(24695-24796)
scaffold0008 (80-181)||(232370-232471)
[»] scaffold0369 (1 HSPs)
scaffold0369 (80-182)||(276-378)
[»] scaffold0218 (1 HSPs)
scaffold0218 (80-181)||(3334-3435)
[»] scaffold0327 (1 HSPs)
scaffold0327 (80-179)||(7986-8085)
[»] scaffold0589 (1 HSPs)
scaffold0589 (80-182)||(9800-9902)
[»] scaffold0554 (1 HSPs)
scaffold0554 (80-191)||(3963-4074)
[»] scaffold0235 (3 HSPs)
scaffold0235 (83-181)||(26621-26719)
scaffold0235 (89-182)||(10856-10949)
scaffold0235 (89-182)||(21070-21163)
[»] scaffold0117 (1 HSPs)
scaffold0117 (80-182)||(814-916)
[»] scaffold0160 (1 HSPs)
scaffold0160 (80-178)||(8083-8181)
[»] scaffold0124 (1 HSPs)
scaffold0124 (84-165)||(7202-7283)
[»] scaffold0243 (1 HSPs)
scaffold0243 (80-182)||(304-406)
[»] scaffold0387 (1 HSPs)
scaffold0387 (106-182)||(14952-15028)
[»] scaffold0610 (1 HSPs)
scaffold0610 (80-181)||(8280-8381)
[»] scaffold0305 (1 HSPs)
scaffold0305 (126-182)||(11440-11496)
[»] scaffold0111 (1 HSPs)
scaffold0111 (135-182)||(3364-3411)
[»] scaffold0413 (1 HSPs)
scaffold0413 (146-182)||(1707-1743)
[»] scaffold0058 (1 HSPs)
scaffold0058 (80-148)||(75406-75474)


Alignment Details
Target: scaffold0692 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 3265 - 3367
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  3265 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatg 3364  T
Q  180 gat 182  Q
    |||    
T  3365 gat 3367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 24310 - 24208
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  24310 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatg 24211  T
Q  180 gat 182  Q
    |||    
T  24210 gat 24208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 41174 - 41072
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  41174 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatg 41075  T
Q  180 gat 182  Q
    |||    
T  41074 gat 41072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 27107170 - 27107272
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  27107170 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatg 27107269  T
Q  180 gat 182  Q
    |||    
T  27107270 gat 27107272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 7824774 - 7824672
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||    
T  7824774 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggataacatttctatg 7824675  T
Q  180 gat 182  Q
    |||    
T  7824674 gat 7824672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 45147426 - 45147325
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||    
T  45147426 ttgtttggtttgtcagaagtcgaagattgaacatcagaaaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaaatgggataacatctctatg 45147327  T
Q  180 ga 181  Q
    ||    
T  45147326 ga 45147325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 17924516 - 17924424
Alignment:
Q  89 ttgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatgga 181  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  17924516 ttgtcagaagtcgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgagccagagtgaaagtgagatagtatctctatgga 17924424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 21673933 - 21674030
Alignment:
Q  84 ttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatgga 181  Q
    |||| |||||||||||||||| |||||||||| |||||||| |||||||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  21673933 ttggtttgtcagaaatcgaagattgaacatcaaagaccgtcaggtttgatgcaaccgttgattgtgctagagtggaagtgagatagtatctctatgga 21674030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 82 - 181
Target Start/End: Complemental strand, 14937219 - 14937120
Alignment:
Q  82 gtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatgga 181  Q
    |||||| |||||| || |||||| |||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| | |||||||||    
T  14937219 gtttggtttgtcataagtcgaagattgaacatcagaaaccgtcaggtttgatgcaaccgttgtttgtgccacagtggaagtgggatagcaactctatgga 14937120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 82 - 181
Target Start/End: Complemental strand, 15364812 - 15364713
Alignment:
Q  82 gtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatgga 181  Q
    |||||| |||||| || |||||| |||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| | |||||||||    
T  15364812 gtttggtttgtcataagtcgaagattgaacatcagaaaccgtcaggtttgatgcaaccgttgtttgtgccaaagtggaagtgggatagcaactctatgga 15364713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 4440802 - 4440700
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||| ||| ||||||||| |||| | |||||||||||| |||||  ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  4440802 ttgtatggtttgtcagaagtcgacgattgaacatcagaaaccgtacggtttgatgcaaccgttatttgtgccagagtggaagtgggataatatctctatg 4440703  T
Q  180 gat 182  Q
    |||    
T  4440702 gat 4440700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 13455617 - 13455519
Alignment:
Q  84 ttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    |||| ||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||    
T  13455617 ttggtttgtcagaagtcgaaggttgaacatcagaaaccgttaggtttgatgcaaccgttgtttgttccagaatggaaatgagatagtatctctatggat 13455519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 23642296 - 23642223
Alignment:
Q  106 ttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    ||||||||||||   |||| |||||||| |||||||||||||| || |||||||||||||||| ||| ||||||    
T  23642296 ttgaacatcagaagtcgtcaggtttgattcaaccgttgtttgtccctgagtggaagtgggataatatttctatg 23642223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 13354024 - 13353926
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctat 178  Q
    |||||||| |||| |||| || ||| |||||||||||| | | || |||||||||||||||||||||||  || | ||||| ||| | |||||||||||    
T  13354024 ttgtttggtttgttagaagtctaagattgaacatcagaaatcatcaggtttgatgcaaccgttgtttgtttcataatggaaatggaacagtatctctat 13353926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 17144657 - 17144741
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgg 164  Q
    |||||||  |||||| || || ||| || |||||||||  || ||||||||||||||| |||||||||| || ||||||||||||    
T  17144657 ttgtttgatttgtcaaaagtctaagatttaacatcagaagccatcgggtttgatgcaatcgttgtttgtaccggagtggaagtgg 17144741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 6414329 - 6414284
Alignment:
Q  137 accgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    |||||||  |||||| |||||||||||||||||||| |||||||||    
T  6414329 accgttggatgtgccggagtggaagtgggatagtatttctatggat 6414284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 182
Target Start/End: Original strand, 26118052 - 26118081
Alignment:
Q  153 gagtggaagtgggatagtatctctatggat 182  Q
    ||||||||||||||||||||||||||||||    
T  26118052 gagtggaagtgggatagtatctctatggat 26118081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 16381905 - 16382007
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  16381905 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatg 16382004  T
Q  180 gat 182  Q
    |||    
T  16382005 gat 16382007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 1648346 - 1648448
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| || ||||||    
T  1648346 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgttgggtttgatgcaaccgttgtttgtgccagagtggaaatgggatagcatttctatg 1648445  T
Q  180 gat 182  Q
    |||    
T  1648446 gat 1648448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 14624889 - 14624987
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctat 178  Q
    |||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  14624889 ttgtttggtttgtcaaaaatcgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctat 14624987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 16233777 - 16233675
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||    
T  16233777 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcgggtttgatgcaaccattgtttgtgccagagtggaagtgggatagcatttccatg 16233678  T
Q  180 gat 182  Q
    |||    
T  16233677 gat 16233675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 23996997 - 23996895
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||    
T  23996997 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcgggtttgatgcaaccattgtttgtgccagagtggaaatgggatagcatttctatg 23996898  T
Q  180 gat 182  Q
    |||    
T  23996897 gat 23996895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 18572400 - 18572299
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||    
T  18572400 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcaggtttgatgcaaccgttgtttgtgccagagtggaagtgagatagcatttctatg 18572301  T
Q  180 ga 181  Q
    ||    
T  18572300 ga 18572299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 21927954 - 21927853
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||| || |||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21927954 ttgtttggtttgtcaaaagtcgaagattgaacatcagagaccgttgagtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 21927855  T
Q  180 ga 181  Q
    ||    
T  21927854 ga 21927853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 23027248 - 23027350
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||| |||||| |||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  23027248 ttgtttggtttgtcagaagtcgaagattgaacatcagaaatcgtcgggtttgatgcaaccgttgtttgtgccggagtggaagtgggatagtatctttatg 23027347  T
Q  180 gat 182  Q
    |||    
T  23027348 gat 23027350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 18837440 - 18837541
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||    
T  18837440 ttgtttggtttgtcagaaatcaatgattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggacgtgggatagcatttctatg 18837539  T
Q  180 ga 181  Q
    ||    
T  18837540 ga 18837541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 15077898 - 15078000
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||| || |||||| ||||||| |||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15077898 ttgtttggtttgtcaaaagtcgaagattgaacaccagaaactgtcgggtttgatgcaactgttgtttgtgccagagtggaagtgggatagtatctctatg 15077997  T
Q  180 gat 182  Q
    |||    
T  15077998 gat 15078000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 16098799 - 16098698
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||| || |||||| |||||||||||| ||||||| |||||||||||| |||||| |||| |||||||||||||||||| || ||||||    
T  16098799 ttgtttggtttgtcataagtcgaagattgaacatcagaaaccgtcgagtttgatgcaactgttgttcgtgctagagtggaagtgggatagcatttctatg 16098700  T
Q  180 ga 181  Q
    ||    
T  16098699 ga 16098698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 14381008 - 14381101
Alignment:
Q  89 ttgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    ||||||||| || ||||||||||||||||| ||  | || ||| ||  |||||||  |||||| ||||||||||| ||||| || |||||||||    
T  14381008 ttgtcagaagtctaaggttgaacatcagaggcctgcaggattgttgacaccgttggatgtgccggagtggaagtgagatagcatttctatggat 14381101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 21936757 - 21936859
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  21936757 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatg 21936856  T
Q  180 gat 182  Q
    |||    
T  21936857 gat 21936859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 24582009 - 24581907
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  24582009 ttgtttggtttgtcagaaatcaaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatg 24581910  T
Q  180 gat 182  Q
    |||    
T  24581909 gat 24581907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 23504241 - 23504139
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||    
T  23504241 ttgtttggtttgtcaaaaatcgaagattgaacatcagagaccgtcgggtttgatgcaactgttgtttgtgccagagtggaattgggatagtatctttatg 23504142  T
Q  180 gat 182  Q
    |||    
T  23504141 gat 23504139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 27011883 - 27011782
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||    
T  27011883 ttgtttggtttgtcagaaatcgaagattgaacatcagagaacgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgagatagcatttctatg 27011784  T
Q  180 ga 181  Q
    ||    
T  27011783 ga 27011782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 19566258 - 19566359
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||| | |||||||||||| ||| |||| |||||||  ||||| |   ||||||||||||||||||||||||||||||| ||||||||||| || |||    
T  19566258 ttgtttcgtttgtcagaaatctaagattgagcatcagaagccgtctgaaatgatgcaaccgttgtttgtgccagagtggaattgggatagtatttcgatg 19566357  T
Q  180 ga 181  Q
    ||    
T  19566358 ga 19566359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 25243919 - 25244006
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggat 167  Q
    |||||||  ||||||||| || ||| ||||||||||||   | |||||||||||||||||||||||||||| |||||||||| |||||    
T  25243919 ttgtttgatttgtcagaagtctaagattgaacatcagaagtcatcgggtttgatgcaaccgttgtttgtgctagagtggaagcgggat 25244006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 25308071 - 25308158
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggat 167  Q
    |||||||  ||||||||| || ||| ||||||||||||   | |||||||||||||||||||||||||||| |||||||||| |||||    
T  25308071 ttgtttgatttgtcagaagtctaagattgaacatcagaagtcatcgggtttgatgcaaccgttgtttgtgctagagtggaagcgggat 25308158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 182
Target Start/End: Complemental strand, 20822243 - 20822150
Alignment:
Q  89 ttgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    |||||| || || ||||||||||||||||| ||  |||| ||| ||  |||||||  ||| || |||||||| ||||||||||| |||||||||    
T  20822243 ttgtcaaaagtctaaggttgaacatcagaggcctgcgggattgttgacaccgttggatgtaccggagtggaaatgggatagtatttctatggat 20822150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 30138320 - 30138218
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  30138320 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatg 30138221  T
Q  180 gat 182  Q
    |||    
T  30138220 gat 30138218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 30147871 - 30147769
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  30147871 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatg 30147772  T
Q  180 gat 182  Q
    |||    
T  30147771 gat 30147769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 13966966 - 13967068
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  13966966 ttgtttggtttgtcagaaatcgaagattgaacatcaaagaccatcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatg 13967065  T
Q  180 gat 182  Q
    |||    
T  13967066 gat 13967068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 16257658 - 16257556
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||    
T  16257658 ttgtttggtttgtcagaaatcgaagattgatcatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggataacatttctatg 16257559  T
Q  180 gat 182  Q
    |||    
T  16257558 gat 16257556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 16742329 - 16742431
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| || ||||||    
T  16742329 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcaggtttgatgcaaccgttgtttgtgccagagtggaagtggaatagcatttctatg 16742428  T
Q  180 gat 182  Q
    |||    
T  16742429 gat 16742431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 6152477 - 6152579
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||| | ||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  6152477 ttgtttagtttgtcagaagtcgaagattgaacatcaaagaccgtcgggtttgatgcaaccgttgtttgtgcttgagtggaagtgggatagtatctctatg 6152576  T
Q  180 gat 182  Q
    |||    
T  6152577 gat 6152579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 8274029 - 8274127
Alignment:
Q  84 ttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||    
T  8274029 ttggtttgtcagaaatcaaagattgaacatcagagaccgtcgggtttgatgcaaccattctttgtgccagagtggaagtgggatagcatttctatggat 8274127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 17193608 - 17193506
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||  ||||||||| |||||| |||||||||||| ||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  17193608 ttgtttgatttgtcagaagtcgaagattgaacatcagaaaccatcgggtttgatgcaaatgttgtttgtgccagagtggaagtgggatagtatctctatg 17193509  T
Q  180 gat 182  Q
    |||    
T  17193508 gat 17193506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 6712035 - 6712136
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||| || ||| |||||||||||| | |||||||||||||||||  ||||||||||||||||||||||||||||| |||||| |||    
T  6712035 ttgtttggtttgtcagaagtctaagattgaacatcagaaatcgtcgggtttgatgcaattgttgtttgtgccagagtggaagtgggataatatctcaatg 6712134  T
Q  180 ga 181  Q
    ||    
T  6712135 ga 6712136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 18749179 - 18749078
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||| |||| |||||| ||||||| || | |||||||| ||||||||||||||||||| ||||||||||||| || |||||||||||||||    
T  18749179 ttgtttggtttgttagaagtcgaagattgaacaacataaaccgtcggttttgatgcaaccgttgtttttgccagagtggaaatgagatagtatctctatg 18749080  T
Q  180 ga 181  Q
    ||    
T  18749079 ga 18749078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 15610618 - 15610554
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgt 144  Q
    |||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  15610618 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccatcgggtttgatgcaaccgttgt 15610554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 15095519 - 15095434
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtggg 165  Q
    |||||||| || ||| || |||||| |||||||||| |   ||||||||||||||||||||||||||||||| | |||||||||||    
T  15095519 ttgtttggtttttcaaaagtcgaagattgaacatcaaaagtcgtcgggtttgatgcaaccgttgtttgtgcctgcgtggaagtggg 15095434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 266921 - 267020
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||| |||||| ||||||| || |   | | ||||||||||||||| |||||||| || |||||||||||||||| ||| ||||||    
T  266921 ttgtttggtttgtcagaagtcgaagattgaacaccaaaagtcattgggtttgatgcaaccattgtttgtaccggagtggaagtgggataatatttctatg 267020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 24831114 - 24831216
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  24831114 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatg 24831213  T
Q  180 gat 182  Q
    |||    
T  24831214 gat 24831216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 12640164 - 12640262
Alignment:
Q  84 ttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||    
T  12640164 ttggtttgtcagaaatcaaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccaaagtggaagtgggatagcatttctatggat 12640262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 23816970 - 23817072
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||| |||||| |||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  23816970 ttgtttggtttgtcagaagtcgaagattgaacatcagaaaccgtcaggtttgatacaaccgttgtttgtgccagagtggaagtgggatagtatcgctatg 23817069  T
Q  180 gat 182  Q
    |||    
T  23817070 gat 23817072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 22761499 - 22761598
Alignment:
Q  83 tttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    ||||| |||| ||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||    
T  22761499 tttggtttgttagaaatcgaagattgaacatcagaaaccgtcgggtttgatgtaaccgttgtttgtgccagagtggaagtgggatatcatctctatggat 22761598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 24569595 - 24569696
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||| ||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||  || ||||||    
T  24569595 ttgtttggtttgttagaaatcgaagattgaacatcagaaaccgtcgggtttgatgcaactgttgtttgtgccagagtggaagtgggataacatttctatg 24569694  T
Q  180 ga 181  Q
    ||    
T  24569695 ga 24569696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 22276794 - 22276692
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||| || ||||||    
T  22276794 ttgtttggtttgtcagaaatagaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtaccaaaatggaaatgggatagcatttctatg 22276695  T
Q  180 gat 182  Q
    |||    
T  22276694 gat 22276692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 25129163 - 25129062
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||| |||||| ||||| |||| | |||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  25129163 ttgtttggtttgtcagaagtcgaagattgaatatcataaaccgtcgggtttgatgcaaccgttgtttatgccagagtggaaatgggataatatctctatg 25129064  T
Q  180 ga 181  Q
    ||    
T  25129063 ga 25129062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 21906096 - 21906195
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||| ||| ||||||||| || ||| ||| |||||||| ||||||  | |||||||||||||||||||| || ||||||||||| |||||||| ||||||    
T  21906096 ttgtgtggtttgtcagaagtctaagattggacatcagaaaccgtcaagcttgatgcaaccgttgtttgtaccggagtggaagtgtgatagtatatctatg 21906195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 182
Target Start/End: Original strand, 11357874 - 11357903
Alignment:
Q  153 gagtggaagtgggatagtatctctatggat 182  Q
    ||||||||||||||||||||||||||||||    
T  11357874 gagtggaagtgggatagtatctctatggat 11357903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 19651988 - 19652081
Alignment:
Q  89 ttgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    ||||||||| || || |||||||||||||| ||  | || ||| ||  |||||||  |||||| |||||||||||||| ||||| |||||||||    
T  19651988 ttgtcagaagtctaacgttgaacatcagaggcctgcagggttgttgacaccgttggatgtgccggagtggaagtgggacagtatttctatggat 19652081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 20830851 - 20830953
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  20830851 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatg 20830950  T
Q  180 gat 182  Q
    |||    
T  20830951 gat 20830953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 22135016 - 22135117
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||| | |||| |||||||| | | |||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  22135016 ttgtttggtttgtcagaagttgaagattgaacataaaaaaccgtcgggtttgatgcaactgttgtttgtgccacagtagaagtgggatagtatctctatg 22135115  T
Q  180 ga 181  Q
    ||    
T  22135116 ga 22135117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 21201757 - 21201849
Alignment:
Q  89 ttgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatgga 181  Q
    |||| |||| |||||  ||||||||||||  || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21201757 ttgttagaagtcgaaaattgaacatcagaagccatcgagtttgatgcaaccattgtttgtgccagagtggaagtgggatagtatctctatgga 21201849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 182
Target Start/End: Complemental strand, 19855196 - 19855103
Alignment:
Q  89 ttgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    ||||||||| || |||||||| |||||||  ||  |||| ||| ||  |||||||  |||||||||||||||||||||||| || |||||||||    
T  19855196 ttgtcagaagtctaaggttgagcatcagaagcctgcggggttgttgacaccgttggatgtgccagagtggaagtgggatagcatttctatggat 19855103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 182
Target Start/End: Complemental strand, 37677907 - 37677878
Alignment:
Q  153 gagtggaagtgggatagtatctctatggat 182  Q
    ||||||||||||||||||||||||||||||    
T  37677907 gagtggaagtgggatagtatctctatggat 37677878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 10210 - 10108
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10210 ttgtttggtttgtcagaaatcgaagattgaacatcagaaaccgtagggtttgatgcaaccgttgtttgtgccagtgtggaagtgggatagtatctctatg 10111  T
Q  180 gat 182  Q
    |||    
T  10110 gat 10108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 27656 - 27758
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  27656 ttgtttggtttgtcagaaatcaaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatg 27755  T
Q  180 gat 182  Q
    |||    
T  27756 gat 27758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 23156842 - 23156944
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  23156842 ttgtttggtttgtcagaagtcgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtaccagattggaagtgggatagtatctctatg 23156941  T
Q  180 gat 182  Q
    |||    
T  23156942 gat 23156944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 16876929 - 16877027
Alignment:
Q  84 ttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  16876929 ttggtttgtcagaaatcaaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatggat 16877027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 21850167 - 21850269
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || ||||||    
T  21850167 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccatagtggaaatgggatagcatttctatg 21850266  T
Q  180 gat 182  Q
    |||    
T  21850267 gat 21850269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 22983384 - 22983282
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||| |||||| |||||||||||| ||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22983384 ttgtttggtttgtcagaagtcgaagattgaacatcagaaaccgcagggtttgatgcaaccgttgtttgtgccagagtggaattgggatagtatctctatg 22983285  T
Q  180 gat 182  Q
    |||    
T  22983284 gat 22983282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 20652167 - 20652264
Alignment:
Q  84 ttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatgga 181  Q
    |||| ||||||||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  20652167 ttggtttgtcagaagtcgaagattgaacatcagaaaccgtcgggtttgatgcaaccattgtttgtgctagagtggaagtgggatagtatctctatgga 20652264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 21196332 - 21196434
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||| || ||  |||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  21196332 ttgtttggtttgtcagaagtcaaaaattgaacatcagaaaccgtcgggtttgatgcaaccgttgtttgtgccatagtggaggtgggatagtatctctatg 21196431  T
Q  180 gat 182  Q
    |||    
T  21196432 gat 21196434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 22316142 - 22316041
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||| |||||| |||||||| ||| | | ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  22316142 ttgtttggtttgtcagaagtcgaagattgaacattagaaatcatcgagtttgatgcaaccgttgtttgtgccagagtggaagtgggacaatatctctatg 22316043  T
Q  180 ga 181  Q
    ||    
T  22316042 ga 22316041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 25283081 - 25282979
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||| || ||| ||||||||||||    || ||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  25283081 ttgtttggtttgtcagaagtctaagattgaacatcagaagatgtagggtttgatgcaaccgttgtttgtgcctgagtggaagtaggatagtatctatatg 25282982  T
Q  180 gat 182  Q
    |||    
T  25282981 gat 25282979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 25283307 - 25283205
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||| || ||| ||||||||||||    || ||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  25283307 ttgtttggtttgtcagaagtctaagattgaacatcagaagatgtagggtttgatgcaaccgttgtttgtgcctgagtggaagtaggatagtatctatatg 25283208  T
Q  180 gat 182  Q
    |||    
T  25283207 gat 25283205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 23901217 - 23901138
Alignment:
Q  89 ttgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggata 168  Q
    ||||||||| |||||| |||||||||| | | |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  23901217 ttgtcagaagtcgaagattgaacatcataaatcgtcgggtttgatgcaaccgttgtttgtgctagattggaagtgggata 23901138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 22366495 - 22366597
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||| ||| | || |||||||  ||||| ||  |||||||||| || |||||||| |||||||||||||||||||| || |||    
T  22366495 ttgtttggtttgtcagaaatctaagatcgagcatcagatgccgtcaggagtgatgcaaccattttttgtgccggagtggaagtgggatagtatttcgatg 22366594  T
Q  180 gat 182  Q
    |||    
T  22366595 gat 22366597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 22283945 - 22283853
Alignment:
Q  90 tgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    |||||||| || ||| ||||||||||||   | |||||||||| ||||||||||||| | || ||||||||||| |||| ||| | |||||||    
T  22283945 tgtcagaagtctaagattgaacatcagaagtcttcgggtttgacgcaaccgttgtttattcctgagtggaagtgagataatatttatatggat 22283853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 22365694 - 22365746
Alignment:
Q  130 tgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    |||||||||| ||||||||||| |||||||||||||||| ||| || ||||||    
T  22365694 tgatgcaaccattgtttgtgccggagtggaagtgggataatatttcgatggat 22365746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 21043396 - 21043359
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcaga 117  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  21043396 ttgtttggtttgtcagaaatcgaaggttgagcatcaga 21043359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 182
Target Start/End: Original strand, 29303329 - 29303358
Alignment:
Q  153 gagtggaagtgggatagtatctctatggat 182  Q
    ||||||||||||||||||||||||||||||    
T  29303329 gagtggaagtgggatagtatctctatggat 29303358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 15292545 - 15292647
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  15292545 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccatcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatg 15292644  T
Q  180 gat 182  Q
    |||    
T  15292645 gat 15292647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 13248530 - 13248429
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  13248530 ttgtttggtttgtcagaaatcgaagattgaatatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggattgtatttctatg 13248431  T
Q  180 ga 181  Q
    ||    
T  13248430 ga 13248429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 9291720 - 9291619
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  9291720 ttgtttggtttgtaagaaatcaaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatg 9291621  T
Q  180 ga 181  Q
    ||    
T  9291620 ga 9291619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 14998201 - 14998100
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| | ||||    
T  14998201 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcgggttggatgcaaccgttgtttgtgccaaagtggaagtgagatagtatttttatg 14998102  T
Q  180 ga 181  Q
    ||    
T  14998101 ga 14998100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 38811792 - 38811698
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatct 174  Q
    |||||||| |||||||||||||||| ||||||||||||  |||  ||||||||||| |||| |||||||||| ||||| ||||||||||||||||    
T  38811792 ttgtttggtttgtcagaaatcgaagattgaacatcagaagccgctgggtttgatgcgaccgctgtttgtgcctgagtgaaagtgggatagtatct 38811698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 12342252 - 12342353
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||  ||||||||| |||||| ||||||||||||   | ||| ||||||||||| |||| |||||||| ||||||||||||||||| |||||||||    
T  12342252 ttgtttgatttgtcagaagtcgaagattgaacatcagaagtc-tcgagtttgatgcaatcgttttttgtgccggagtggaagtgggatagcatctctatg 12342350  T
Q  180 gat 182  Q
    |||    
T  12342351 gat 12342353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 182
Target Start/End: Complemental strand, 20891858 - 20891765
Alignment:
Q  89 ttgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    ||||||||| || |||||||| |||||||  ||  | || ||||||  |||||||  ||| || |||||||||||||| |||||||||||||||    
T  20891858 ttgtcagaagtccaaggttgagcatcagaagcctacagggttgatgacaccgttggatgtaccggagtggaagtgggacagtatctctatggat 20891765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 182
Target Start/End: Original strand, 44661326 - 44661355
Alignment:
Q  153 gagtggaagtgggatagtatctctatggat 182  Q
    ||||||||||||||||||||||||||||||    
T  44661326 gagtggaagtgggatagtatctctatggat 44661355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 13824 - 13723
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13824 ttgtttggtttgtcagaaatcgaagattgaataacagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatttctatg 13725  T
Q  180 ga 181  Q
    ||    
T  13724 ga 13723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 45413 - 45312
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  45413 ttgtttggtttgtcagaaatcgaagatttaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatg 45314  T
Q  180 ga 181  Q
    ||    
T  45313 ga 45312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 180840 - 180739
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||    
T  180840 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggataacatttctatg 180741  T
Q  180 ga 181  Q
    ||    
T  180740 ga 180739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 565 - 463
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||| || |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  565 ttgtttggtttgtcaaaagtcgaagattgaacatcagagaccgtcgagtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatttctatg 466  T
Q  180 gat 182  Q
    |||    
T  465 gat 463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 14127 - 14228
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||| ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  14127 ttgtttggtttgttagaaatcaaagattgaacatcagagaccgtcgggtttgatgcaaacgttgtttgtgccagagtggaagtgggatagtatttctatg 14226  T
Q  180 ga 181  Q
    ||    
T  14227 ga 14228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 6091 - 5990
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||    
T  6091 ttgtttggtttgtcagaaatcgaagattgaacattagagaccgtcgggtttgatgcaaccgttgtttgttccagagtggaagtgggatagcatttctatg 5992  T
Q  180 ga 181  Q
    ||    
T  5991 ga 5990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0266 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0266
Description:

Target: scaffold0266; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 9251 - 9352
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||    
T  9251 ttgtttggtttgttagaaatcgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagaatggaagtgggatagcatttctatg 9350  T
Q  180 ga 181  Q
    ||    
T  9351 ga 9352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 18963 - 18862
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18963 ttgtttggtttgtcagaaatcgaagattgaacatcagagacctttgtgtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatttctatg 18864  T
Q  180 ga 181  Q
    ||    
T  18863 ga 18862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 105963 - 106064
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  105963 ttgtttggtttgtcagaaatcgaagattgaacatcagagactgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggaaagcatttctatg 106062  T
Q  180 ga 181  Q
    ||    
T  106063 ga 106064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 55290 - 55391
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||    
T  55290 ttgtttggtttgtcagaaattgaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagaatggaagtgggatagcatttctatg 55389  T
Q  180 ga 181  Q
    ||    
T  55390 ga 55391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 75; Significance: 9e-35; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 444 - 546
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||| | ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  444 ttgtttggtttgtaaaaaatcgaagattgaacatcagaaaccgtcgggtttgatgcaacccttgtttgtgccagagtgaaagtgggatagtatctctatg 543  T
Q  180 gat 182  Q
    |||    
T  544 gat 546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 75; Significance: 9e-35; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 24875 - 24781
Alignment:
Q  84 ttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctat 178  Q
    |||| |||||| || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24875 ttggtttgtcaaaagtcgaagattgaacatcagaaaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctat 24781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 72105 - 72016
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatag 169  Q
    |||||||| |||| |||| |||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  72105 ttgtttggtttgttagaagtcgaagattgaacatcagaaaccgtcgggtttgatgcaaccgttgtttgtgctagagtggaagtgggatag 72016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 32801 - 32892
Alignment:
Q  78 ggttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatag 169  Q
    |||||||||| ||||||||| |||||| |||||||||||| |||||| ||||||||| |||| |||||||| ||||||||||||||||||||    
T  32801 ggttgtttggtttgtcagaagtcgaagattgaacatcagaaaccgtcaggtttgatgtaaccattgtttgttccagagtggaagtgggatag 32892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0876 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0876
Description:

Target: scaffold0876; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 3458 - 3357
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||  |||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  3458 ttgtttgctttgtcaaaaatcaaagattgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggataatatttctatg 3359  T
Q  180 ga 181  Q
    ||    
T  3358 ga 3357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 15572 - 15471
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||    
T  15572 ttgtttggtttgtcagaaatcgaagatttatcatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggataacatttctatg 15473  T
Q  180 ga 181  Q
    ||    
T  15472 ga 15471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 44408 - 44352
Alignment:
Q  126 ggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  44408 ggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagcatttctatggat 44352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 47070 - 46969
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||    
T  47070 ttgtttggtttgtcagaagtcgaagattgaacatcagagaccgtcgggtttcatgcaaccgttgtttgtgcctgagtggaagtgggatagcatttctatg 46971  T
Q  180 ga 181  Q
    ||    
T  46970 ga 46969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 24796 - 24695
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||| |||||| |||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||    
T  24796 ttgtttggtttgtcagaagtcgaagattgaacatcagaaaccgtcgggtttgatgcaatcgttgtttgtaccagagtggaagtgggataatatctctatg 24697  T
Q  180 ga 181  Q
    ||    
T  24696 ga 24695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 232471 - 232370
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||| |||| || ||| |||||||||| |   ||||| ||||||||||||| ||||||||| | |||||||||||||||||||||||||||    
T  232471 ttgtttggtttgttagaagtcaaagattgaacatcaaaagtcgtcgagtttgatgcaaccattgtttgtgtcggagtggaagtgggatagtatctctatg 232372  T
Q  180 ga 181  Q
    ||    
T  232371 ga 232370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 378 - 276
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||  |||||||| || ||||||    
T  378 ttgtttggtttgtcagaaatcgaagattgaacatcagagaccatcgggtttgatgcaaccgttgtttgttccagagtggatttgggatagcatttctatg 279  T
Q  180 gat 182  Q
    |||    
T  278 gat 276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 3334 - 3435
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| || ||||||    
T  3334 ttgtttggtttgtcagaaatcgaagattgaaaatcagagaccgacgagtttgatgcaaccgttgtttgtgccggagtggaagtgggatagcatttctatg 3433  T
Q  180 ga 181  Q
    ||    
T  3434 ga 3435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0327 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: scaffold0327
Description:

Target: scaffold0327; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 80 - 179
Target Start/End: Complemental strand, 8085 - 7986
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||||| || |||||| |||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  8085 ttgtttggtttgtcataagtcgaagattgaacatcatagaccgtcaggtttgatgcaatcgttgtttgtgccagagtggaagtgggataatatctctatg 7986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0589 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 9902 - 9800
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| |||| ||||||||||| |||||||| | | ||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  9902 ttgtttggtttgttagaaatcgaagattgaacataaaaaaccgtcgggtttgatgcaaccattgtttgtgccagagtggaagtgagataatatctctatg 9803  T
Q  180 gat 182  Q
    |||    
T  9802 gat 9800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 80 - 191
Target Start/End: Complemental strand, 4074 - 3963
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||| ||| ||||| ||| |||||| |||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  4074 ttgtctggtttgtccgaagtcgaagattgaacatcagaaaccgtcaggtttgatgcaaccgttgttcgtgccagagtggaagtgggatagcatttctatg 3975  T
Q  180 gatatttttcga 191  Q
    ||| || |||||    
T  3974 gattttgttcga 3963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 26719 - 26621
Alignment:
Q  83 tttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatgga 181  Q
    ||||| |||| ||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||  || ||||||||    
T  26719 tttggtttgtaagaaatcgaagattgaacatcagagactatcgggtttgatgcaaccgttgtttgtgccagaatggaagtgggataacatttctatgga 26621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 10856 - 10949
Alignment:
Q  89 ttgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    |||||| || || ||||||||||||||||| ||  | || ||| ||  |||||||  |||||| ||||||||||||||||| || |||||||||    
T  10856 ttgtcaaaagtctaaggttgaacatcagaggcctgcagggttgttgacaccgttggatgtgccggagtggaagtgggatagcatttctatggat 10949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 21070 - 21163
Alignment:
Q  89 ttgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    |||||| || || ||||||||||||||||| ||  | || ||| ||  |||||||  |||||| ||||||||||||||||| || |||||||||    
T  21070 ttgtcaaaagtctaaggttgaacatcagaggcctgcagggttgttgacaccgttggatgtgccggagtggaagtgggatagcatttctatggat 21163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 814 - 916
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||||||| ||||||  ||||||||||| |||||||||||||||||||  ||||||||| |||||||||||||||||||| || ||||||    
T  814 ttgtttggtttgtcagaagtcgaagaatgaacatcagaaaccgtcgggtttgatgcaattgttgtttgtaccagagtggaagtgggatagcatttctatg 913  T
Q  180 gat 182  Q
    |||    
T  914 gat 916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 8181 - 8083
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctat 178  Q
    |||||| | |||||| ||||||||| || || |||||| |||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8181 ttgttttgtttgtcaaaaatcgaagattaaatatcagaaaccgttaggtttgatgcaaccgttgtttgtgccaaagtggaagtgggatagtatctctat 8083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 7202 - 7283
Alignment:
Q  84 ttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtggg 165  Q
    |||| |||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  7202 ttggtttgtcagaaatcgaagattgaacatcaaagaccatcgggtttgatgcaaccgttgtttgtgccaaagtggaaatggg 7283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 406 - 304
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| ||||  ||| |||||| |||||||||||| |||||||||||||||||||||||||||||||| |||  ||||||||||||  || ||||||    
T  406 ttgtttggtttgttggaagtcgaagattgaacatcagaaaccgtcgggtttgatgcaaccgttgtttgtgctagaacggaagtgggataacatatctatg 307  T
Q  180 gat 182  Q
    |||    
T  306 gat 304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0387 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 15028 - 14952
Alignment:
Q  106 ttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    |||||||||||| |||||| |||||||||||||| |||||||||||| ||||||||||||||  |||||||||||||    
T  15028 ttgaacatcagaaaccgtcaggtttgatgcaaccattgtttgtgccaaagtggaagtgggatcatatctctatggat 14952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0610 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0610
Description:

Target: scaffold0610; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 8280 - 8381
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatg 179  Q
    |||||||| | ||||||| || ||| |||||||| ||| |||| |||||||||| |||||||||||||||| ||||||||||| ||| || || ||||||    
T  8280 ttgtttggttcgtcagaagtcaaagattgaacattagaaaccgccgggtttgatacaaccgttgtttgtgctagagtggaagttggacagcatttctatg 8379  T
Q  180 ga 181  Q
    ||    
T  8380 ga 8381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 11496 - 11440
Alignment:
Q  126 ggtttgatgcaaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    ||||||||| ||| |||||||||| | | ||||||||| ||||||||||||||||||    
T  11496 ggtttgatgtaactgttgtttgtgtcggggtggaagtgagatagtatctctatggat 11440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 3364 - 3411
Alignment:
Q  135 caaccgttgtttgtgccagagtggaagtgggatagtatctctatggat 182  Q
    ||||||||||||||||| |||||||||| ||||||||| | |||||||    
T  3364 caaccgttgtttgtgccggagtggaagtaggatagtatatatatggat 3411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 1743 - 1707
Alignment:
Q  146 tgtgccagagtggaagtgggatagtatctctatggat 182  Q
    ||||||||||||||||||||||||||| || ||||||    
T  1743 tgtgccagagtggaagtgggatagtatatccatggat 1707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 75474 - 75406
Alignment:
Q  80 ttgtttggattgtcagaaatcgaaggttgaacatcagagaccgtcgggtttgatgcaaccgttgtttgt 148  Q
    |||||||  |||||| || || ||| ||||||||||||  || ||||||| ||||||||||||||||||    
T  75474 ttgtttgctttgtcaaaagtctaagattgaacatcagaagccatcgggttggatgcaaccgttgtttgt 75406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University