View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_330 (Length: 201)
Name: NF9361A_low_330
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_330 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 39080749 - 39080906
Alignment:
| Q |
24 |
aggtctttatgtattaggttcctaataagctctaaatatatgttatatccttgtatatagttgtatcactgatcatcatcaattttaatataatttttct |
123 |
Q |
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| T |
39080749 |
aggtctttatgtattatgttcctaataagctctaaatatatattatatccttgtatatagttgtatcactgatcattatcaattttaatataatttttct |
39080848 |
T |
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| Q |
124 |
tgagttctaccctcaattctcaatctctttaaatgatttcatcccatttcccatctct |
181 |
Q |
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| T |
39080849 |
tgagttctaccctcaattctcaatctctttaaatgatttcatcccatttcacatctct |
39080906 |
T |
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Target: chr4; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 79 - 173
Target Start/End: Original strand, 39090169 - 39090261
Alignment:
| Q |
79 |
tatagttgtatcactgatcatcatcaattttaatataatttttcttgagttctaccctcaattctcaatctctttaaatgatttcatcccatttc |
173 |
Q |
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||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||| |
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| T |
39090169 |
tatagttgtatcact--tcatcatcaatttcaatatactttttcttgagttccaccctcaactctcaatctctttaaatgatttcctaccatttc |
39090261 |
T |
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