View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_34 (Length: 422)
Name: NF9361A_low_34
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 24 - 407
Target Start/End: Complemental strand, 6916570 - 6916191
Alignment:
| Q |
24 |
tgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcaccctttccctgtgtcatcgaacgaatagccgtagaatacccaaacatat |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916570 |
tgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcaccctttccctgtgtcatcgaacgaatagccgtagaatacccaaacatat |
6916471 |
T |
|
| Q |
124 |
tgttaagagggacatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctcttgttgaggtcaccagcaacagctcc |
223 |
Q |
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|||||||||| ||||||||||| |||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916470 |
tgttaagaggcacatgagctgtaatgacagaataatcttcgtcctgaacattgccaacaatcacaccttttctcttgttgaggtcaccagcaacagctcc |
6916371 |
T |
|
| Q |
224 |
ctgaaattctgttggtactttcagttcaacaagcataacaggttctaatataactggtctggaagctgtgtaacactctctaaaagcatagatagaagcc |
323 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916370 |
ctgaaattctgttggtactttcagttc----agcataacaggttctaatataactggtctggaagctgtgtaacactctctaaaagcatagatagaagcc |
6916275 |
T |
|
| Q |
324 |
aacttaaaggcaagttcactggaatcaacatcatgagcagcaccatctgtcaagacaactcggagattttcaaccggatgtcca |
407 |
Q |
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| T |
6916274 |
aacttaaaggcaagttcactggaatcaacatcatgagcagcaccatctgtcaagacaactcggagattttgaactggatgtcca |
6916191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 302 - 407
Target Start/End: Original strand, 15038055 - 15038160
Alignment:
| Q |
302 |
tctaaaagcatagatagaagccaacttaaaggcaagttcactggaatcaacatcatgagcagcaccatctgtcaagacaactcggagattttcaaccgga |
401 |
Q |
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| T |
15038055 |
tctaaaagcatagatagaagccatcttaaaggcaagctcactggaatcaacagcatgagcagcaccatctgtcaagacaactcggagattttcaacggga |
15038154 |
T |
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| Q |
402 |
tgtcca |
407 |
Q |
| |
|
|||||| |
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| T |
15038155 |
tgtcca |
15038160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 197 - 300
Target Start/End: Original strand, 15037825 - 15037928
Alignment:
| Q |
197 |
cttgttgaggtcaccagcaacagctccctgaaattctgttggtactttcagttcaacaagcataacaggttctaatataactggtctggaagctgtgtaa |
296 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||| |||||||||||| |||||| |
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| T |
15037825 |
cttgttgaggtcaccagcaacagctccctgaaattcatttggtacttttagctcaacaagcataacaggctctaatatagttggtctggaagcagtgtaa |
15037924 |
T |
|
| Q |
297 |
cact |
300 |
Q |
| |
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|||| |
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| T |
15037925 |
cact |
15037928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 15035988 - 15036049
Alignment:
| Q |
24 |
tgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcaccctttccctg |
85 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15035988 |
tgtacatcatgagaaacaggtgaatgttccttatattccattgtaaattcaccctttccctg |
15036049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 15036138 - 15036192
Alignment:
| Q |
82 |
cctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagagggac |
136 |
Q |
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|||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |
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| T |
15036138 |
cctgtgtcatcgaacgaagagctgtagagtacccaaacatattgttaagagggac |
15036192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 15037676 - 15037738
Alignment:
| Q |
135 |
acatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctc |
197 |
Q |
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||||||||| | |||||||| |||||| |||||||||||||||||||||||| ||| |||||| |
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| T |
15037676 |
acatgagctataatgacagagtcatctccatcctgatcattgccaacaatcataccctttctc |
15037738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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