View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_36 (Length: 410)
Name: NF9361A_low_36
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 5 - 404
Target Start/End: Original strand, 9998947 - 9999346
Alignment:
| Q |
5 |
gtttggtgttgacaggagcatagggaattggctagggaagcggtgaggaaatcattggtactattaaagaatggtgaaaatgttgataagccgatacttc |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9998947 |
gtttggtgttgacaggagcatagggaattggctagggaagcggtgaggaaatcattggtactattaaagaatggtgaaaatgttgataagccgatacttc |
9999046 |
T |
|
| Q |
105 |
ctcttcctaaaaaggcttcaaaaatacttgttgctggaagtcatgctgataatctaggatatcaatgtggtggatggaccactcaatggcaaggacaaag |
204 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9999047 |
ctcttcctaaaaaggcttccaaaatacttgttgctggaagtcatgctgataatctaggatatcaatgtggtggatggaccattcaatggcaaggacaaag |
9999146 |
T |
|
| Q |
205 |
tggcaacgacatcaccactggtatacaaaacagctattttccgcgatttacaattgacagtactgatattcataacatacaatgttaacattgcttaact |
304 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9999147 |
tggcaacaacatcaccactggtatacaaaacagctattttccgcgatttacaattgacagtactgatattcataacatacaatgttaacattgcttaact |
9999246 |
T |
|
| Q |
305 |
aatatacaggtactccaattctgagtgctataaaaaacgcagttgacaaagaaaccaaggtattctacgaggagaatccttcattagactatgtaaaatc |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9999247 |
aatatacaggtactccaattctgagtgctataaaaaacgcagtcgacaaagaaaccaaggtattctacgaggagaatccttcattagactatgtaaaatc |
9999346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 10004671 - 10004890
Alignment:
| Q |
13 |
ttgacaggagcatagggaattggctagggaagcggtgaggaaatcattggtactattaaagaatggtgaaaatgttgataagccgatacttcctcttcct |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10004671 |
ttgacaggagcatagggaattggctagggaagcggtgagaaaatcattggtactattaaagaatggtgaaaatgttgataagccgatacttcctcttcct |
10004770 |
T |
|
| Q |
113 |
aaaaaggcttcaaaaatacttgttgctggaagtcatgctgataatctaggatatcaatgtggtggatggaccactcaatggcaaggacaaagtggcaacg |
212 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10004771 |
aaaaagtcttcaaaaatacttgttgctggaagtcatgctgataatctaggatatcaatgtggtggatggaccattcaatggcaaggacaaagtggcaaca |
10004870 |
T |
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| Q |
213 |
acatcaccactggtatacaa |
232 |
Q |
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|||||||||||||||||||| |
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| T |
10004871 |
acatcaccactggtatacaa |
10004890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 9991820 - 9992037
Alignment:
| Q |
13 |
ttgacaggagcatagggaattggctagggaagcggtgaggaaatcattggtactattaaagaatggtgaaaatgttgataagccgatacttcctcttcct |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |
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| T |
9991820 |
ttgacaggagcatagggaattggctagggaagctgtgaggaaatcattggtactattaaagaatggtgaaaatgctgataagccgcttcttcctcttcct |
9991919 |
T |
|
| Q |
113 |
aaaaaggcttcaaaaatacttgttgctggaagtcatgctgataatctaggatatcaatgtggtggatggaccactcaatggcaaggacaaagtggcaacg |
212 |
Q |
| |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| |
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| T |
9991920 |
aaaaaggctccaaaaatactcgttgctggaagtcatgctgataatctaggatatcaatgtggtggatggaccattcagtggcaaggacttagtggcaaca |
9992019 |
T |
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| Q |
213 |
acatcaccactggtatac |
230 |
Q |
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||||||| | |||||||| |
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| T |
9992020 |
acatcactagtggtatac |
9992037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 10013209 - 10013427
Alignment:
| Q |
13 |
ttgacaggagcatagggaattggctagggaagcggtgaggaaatcattggtactattaaagaatggtgaaaatgttgataagccgatacttcctcttcct |
112 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||| ||||| ||| ||| | ||||||||||||||||||||||||| |
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| T |
10013209 |
ttgacaggagcatagagaattggctagagaagctgttaggaaatcattggtactattgaagaacggtaaaagttctgataagccgatacttcctcttcct |
10013308 |
T |
|
| Q |
113 |
aaaaaggcttcaaaaatacttgttgctggaagtcatgctgataatctaggatatcaatgtggtggatggaccactcaatggcaaggacaaagtggcaacg |
212 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||||| ||| |
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| T |
10013309 |
aaaaaggctccaaaaatacttgttgctggaagccatgctgataatataggaaatcaatgtggtggatggaccattacatggcaaggacaaagtggaaaca |
10013408 |
T |
|
| Q |
213 |
acatcaccactggtataca |
231 |
Q |
| |
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|||| || ||||||||||| |
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| T |
10013409 |
acatgactactggtataca |
10013427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 290 - 403
Target Start/End: Original strand, 10005380 - 10005493
Alignment:
| Q |
290 |
taacattgcttaactaatatacaggtactccaattctgagtgctataaaaaacgcagttgacaaagaaaccaaggtattctacgaggagaatccttcatt |
389 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
10005380 |
taacattgcttaactgatatacaggtaccccaattctgagtgctataaaacacgcagtcgacaaagaaaccaaggtagtctacgaggagaatccttcatt |
10005479 |
T |
|
| Q |
390 |
agactatgtaaaat |
403 |
Q |
| |
|
||| |||||||||| |
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| T |
10005480 |
agattatgtaaaat |
10005493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 308 - 404
Target Start/End: Original strand, 9992295 - 9992391
Alignment:
| Q |
308 |
atacaggtactccaattctgagtgctataaaaaacgcagttgacaaagaaaccaaggtattctacgaggagaatccttcattagactatgtaaaatc |
404 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |||||||| |
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| T |
9992295 |
atacaggtaccacaattctgagtgctataaaaaacacagttgacaaagaaaccaaggtagtctatgaggagaatccttcactagactacgtaaaatc |
9992391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 360
Target Start/End: Original strand, 10013737 - 10013791
Alignment:
| Q |
306 |
atatacaggtactccaattctgagtgctataaaaaacgcagttgacaaagaaacc |
360 |
Q |
| |
|
||||||||||||| ||||||||| |||||| |||||| ||||||||||||||||| |
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|
| T |
10013737 |
atatacaggtactacaattctgaatgctattaaaaacacagttgacaaagaaacc |
10013791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 104 - 199
Target Start/End: Complemental strand, 33354163 - 33354068
Alignment:
| Q |
104 |
cctcttcctaaaaaggcttcaaaaatacttgttgctggaagtcatgctgataatctaggatatcaatgtggtggatggaccactcaatggcaagga |
199 |
Q |
| |
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|||||||||||||||| | ||||||||||||| || ||||| ||||| |||||||||||||||| |||||||| ||||||| | ||||||||||| |
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| T |
33354163 |
cctcttcctaaaaaggttccaaaaatacttgtggccggaagccatgcaaataatctaggatatcagtgtggtggctggaccattgaatggcaagga |
33354068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 213
Target Start/End: Complemental strand, 33347123 - 33347014
Alignment:
| Q |
104 |
cctcttcctaaaaaggcttcaaaaatacttgttgctggaagtcatgctgataatctaggatatcaatgtggtggatggaccactcaatggcaaggacaaa |
203 |
Q |
| |
|
|||||||||||||||| | |||| |||||||| || ||||| ||||| ||||||||||| |||| || ||||| ||||||| | ||||||||||| | |
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| T |
33347123 |
cctcttcctaaaaaggttccaaagatacttgtggccggaagccatgcaaataatctaggacatcagtgcggtggctggaccattgaatggcaaggagtca |
33347024 |
T |
|
| Q |
204 |
gtggcaacga |
213 |
Q |
| |
|
|||||||||| |
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|
| T |
33347023 |
gtggcaacga |
33347014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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