View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_38 (Length: 407)
Name: NF9361A_low_38
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 7 - 189
Target Start/End: Complemental strand, 37566966 - 37566782
Alignment:
| Q |
7 |
ttaacatggtaatatatccttaattcctctgcttgttttcaacaatgttttaaaacccgaaacaaactagacggtttaaagaggttgaaccacgataaaa |
106 |
Q |
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| T |
37566966 |
ttaacatggtaatatatccttaattcctctgcttgttttcaacaatcttttaaaacccgaatcaaactagacggtttaaagaggttgaaccacgataaaa |
37566867 |
T |
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| Q |
107 |
agtcccactgattcg--attcggttcagtttttaaaacactgaatttagagtaaaaaatgtaacactaataccatgaggagttta |
189 |
Q |
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| T |
37566866 |
agtcccactgattcgatattcggttcagtttttaaaacactgaatttagagtaaaaaatgtaacactaataccatgaggagttta |
37566782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 229 - 394
Target Start/End: Complemental strand, 37566754 - 37566589
Alignment:
| Q |
229 |
accattgtcttaattatgttgttgatcaggattgttttggctgttggattgagcatgctggtgatagggactaaaacaaacaacagatcaagtggtactt |
328 |
Q |
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| T |
37566754 |
accattgtcttaattatgttgttgatcaggattgttttggctgttggattgagcatgctggtgatagggactaaaacaaacaacagatcaagtggtactt |
37566655 |
T |
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| Q |
329 |
gtggtttcacagaccatcactttctatccattggtgggattttgtgttttgtccatggcctattct |
394 |
Q |
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| T |
37566654 |
gtggtttcacagaccatcattttctatccattggtgggattttgtgctttgtccatggcctattct |
37566589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 386
Target Start/End: Complemental strand, 15515032 - 15514891
Alignment:
| Q |
245 |
tgttgttgatcaggattgttttggctgttggattgagcatgctggtgatagggactaaaacaaacaacagatcaagtggtacttgtggtttcacagacca |
344 |
Q |
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| T |
15515032 |
tgttgttgatcagggttgtggtggctgttggattgtccatgctggtaataggggcaatgtcaaacaacaggtcaaaggattcttgtggtttctcacacca |
15514933 |
T |
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| Q |
345 |
tcactttctatccattggtgggattttgtgttttgtccatgg |
386 |
Q |
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| T |
15514932 |
tcactttctgtccattggtgggatgtcttgttttgttcatgg |
15514891 |
T |
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