View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_39 (Length: 407)
Name: NF9361A_low_39
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 10 - 402
Target Start/End: Original strand, 45099062 - 45099455
Alignment:
| Q |
10 |
aatatcacaaaaatgcaaccgaatcaaatgtgaaacgccatcacgagccacaggaaaattccatgttatattaaaccttgaagctaaacttgagttttcc |
109 |
Q |
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| T |
45099062 |
aatatcacaaaaatgcaaccgaatcaaatgtgaaacgccatcacgagccacaggaaaattccatgttatattaaaccttgaagctaaacttgagttttcc |
45099161 |
T |
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| Q |
110 |
ctattcatctgttgagcagtcatgtaaacattttcaggtgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcatgtt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45099162 |
ctattcatctgttgagcagtcatgtaaacattttcaggcgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcatgtt |
45099261 |
T |
|
| Q |
210 |
tagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtaccattaaaaggagttattttcatacctcctacattaatcct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45099262 |
tagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtgtcattaaaaggagttattttcatacctcctacattaatcct |
45099361 |
T |
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| Q |
310 |
atgaacagtttccaaaacctgagatgaaagatttctatactcttccacaccagaagga-caaccaaccttgttccataatctataacaaaatct |
402 |
Q |
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| T |
45099362 |
atgaacagtttccaaaacctgagatgaaagatttctatactcttccacaccagaaggaccaaccaaccttgttccataatctataacaaaatct |
45099455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 107 - 327
Target Start/End: Complemental strand, 17348858 - 17348638
Alignment:
| Q |
107 |
tccctattcatctgttgagcagtcatgtaaacattttcaggtgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcat |
206 |
Q |
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||||||||||||| ||||||||||| |||||| | || || ||||||||| || || || || ||||| ||||| ||||| |||||||| ||| || |
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| T |
17348858 |
tccctattcatctcctgagcagtcatataaacactatccggcgcgatctctctagccgcgccccctttctgataatctggtgtgtgagtgctcactacag |
17348759 |
T |
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| Q |
207 |
gtttagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtaccattaaaaggagttattttcatacctcctacattaat |
306 |
Q |
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|||||||| ||||||||||||| | |||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||| |||||| |||||||| |
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| T |
17348758 |
ccttagctgcatccttaaaaaccagaaaatccttatcaggaatccatgttctccaaagggtatcattaaaaggagttaatttttcacctccaacattaat |
17348659 |
T |
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| Q |
307 |
cctatgaacagtttccaaaac |
327 |
Q |
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|||||||| |||||| ||||| |
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| T |
17348658 |
cctatgaatagtttctaaaac |
17348638 |
T |
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