View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9361A_low_40 (Length: 405)
Name: NF9361A_low_40
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_40 |
 | |
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| [»] chr6 (5 HSPs) |
| |
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| [»] chr5 (3 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 27876414 - 27876010
Alignment:
| Q |
1 |
actgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876414 |
actgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcg |
27876315 |
T |
|
| Q |
101 |
gtgcacgaagaacaataaccagatgatgtcaatgatggtgttcgtcgatcaacacgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaa |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876314 |
gtgcacgaagaacaagaaccagatgatgtcaatgatggtgttcgtcgatcaacgcgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaa |
27876215 |
T |
|
| Q |
201 |
gccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876214 |
gccatgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
27876115 |
T |
|
| Q |
301 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876114 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
27876015 |
T |
|
| Q |
401 |
cgtga |
405 |
Q |
| |
|
||||| |
|
|
| T |
27876014 |
cgtga |
27876010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 26978583 - 26978196
Alignment:
| Q |
1 |
actgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26978583 |
actgcaaagtaagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaacca |
26978484 |
T |
|
| Q |
101 |
gtgcacgaagaacaataaccagatgatgtcaatgatggtgttcgtcgatcaacacgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaa |
200 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
26978483 |
g---------------aaccagatgatgtcaataatggtgttcgtcgatcaacgcgtcagacgcagaaaccatcttggcaatcagactatgttatgacga |
26978399 |
T |
|
| Q |
201 |
gccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26978398 |
gccacgatgcatattgtcttataactgaagaaggtgaaccgtcaaattttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
26978299 |
T |
|
| Q |
301 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26978298 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
26978199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 8 - 401
Target Start/End: Complemental strand, 18148902 - 18148509
Alignment:
| Q |
8 |
agtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtgcacg |
107 |
Q |
| |
|
|||||||| ||||| |||| ||||| ||||||| ||| |||||||| ||||||||||||| ||| |||||||||||||||||||||||||| | ||||| |
|
|
| T |
18148902 |
agtgagcataaaaaagacaacactttcaaagagattgcaatagtgcatatggaagaaaaattcaaggaaagtgattcttctgaagctgaatcagagcacg |
18148803 |
T |
|
| Q |
108 |
aagaacaataaccagatgatgtcaatgatggtgttcgtcgatcaacacgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaagccacga |
207 |
Q |
| |
|
| | ||| ||||| ||| ||||||| ||||| ||||||||||| ||||| |||||||||| ||| | ||| | ||||| |||| | ||| | |
|
|
| T |
18148802 |
atgtgcaagaaccaaatgcggtcaatggtggtgcctgtcgatcaacatgtcaggcgcagaaaccatctcaatagtcaaaatatgtaatgaagatccaaaa |
18148703 |
T |
|
| Q |
208 |
tgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgcatgaagaa |
307 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| |||| |||||| ||||||||||| ||| || || | ||| |||||| ||||||||||||| |
|
|
| T |
18148702 |
tgcatattgtcttctaatggaagaaggtgaaccttcaaattttcaagaggcgttgaagaattcatatttttttaaatatatgacaataatgcatgaagaa |
18148603 |
T |
|
| Q |
308 |
atggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaac |
401 |
Q |
| |
|
||||||||| |||| || ||||||||||||||||||||| ||||| ||||||||| |||| ||||||||| ||||| |||| ||||||||| |
|
|
| T |
18148602 |
atggaggccctacaaagaaacaagacatgggagcttgttaaactttcaaagggtcaaaaagacattggaaagaaatgaacatacgagatcaaac |
18148509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 273 - 405
Target Start/End: Original strand, 8565162 - 8565294
Alignment:
| Q |
273 |
atgcttctcaatggatgacagcaatgcatgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccat |
372 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||| ||| ||| ||||||||| ||||||||||| |||||||||||||||||||| |||| |||| ||| |
|
|
| T |
8565162 |
atgcttcttaatggatgataataatgcatgaagatatgaaggacttacatagaaacaagacatgtgagcttgttgaacttccaaaaggtcaaaaagtcat |
8565261 |
T |
|
| Q |
373 |
tggaaacaaatgggtatacaagatcaaacgtga |
405 |
Q |
| |
|
| ||||||||||| |||||||||||||| |||| |
|
|
| T |
8565262 |
tcgaaacaaatggatatacaagatcaaatgtga |
8565294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 148 - 349
Target Start/End: Original strand, 8564961 - 8565161
Alignment:
| Q |
148 |
atcaacacgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaagccacgatgcatattgtcttataactgaagaaggtgaaccgtcaact |
247 |
Q |
| |
|
|||||| | ||| ||||| ||||| |||||| ||||| ||||||||| || || ||| || ||||| ||||| |||||||| |||||||||| |||||| |
|
|
| T |
8564961 |
atcaacgcctcaaacgcaaaaaccatcttggaaatcaaactatgttacgatgaggcacaattcatatagtcttctaactgaacaaggtgaaccttcaact |
8565060 |
T |
|
| Q |
248 |
tttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgcatgaagaaatggaggccttacataggaacaagacatgggagcttgttg |
347 |
Q |
| |
|
|| || |||||||| || ||| |||||||| ||||||||| | ||| ||||||||| ||| ||| ||||||||| |||||||||| |||||||||| |
|
|
| T |
8565061 |
tt-caagaggcgttaaacagttaaaatgcttcttaatggatgataacaacgcatgaagatatgaaggacttacatagaaacaagacatctgagcttgttg |
8565159 |
T |
|
| Q |
348 |
aa |
349 |
Q |
| |
|
|| |
|
|
| T |
8565160 |
aa |
8565161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 41721022 - 41721426
Alignment:
| Q |
1 |
actgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41721022 |
actgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcg |
41721121 |
T |
|
| Q |
101 |
gtgcacgaagaacaataaccagatgatgtcaatgatggtgttcgtcgatcaacacgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaa |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41721122 |
gtgcacgaagaacaagaaccagatgatgtcaatgatggtgttcgtcgatcaacgcgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaa |
41721221 |
T |
|
| Q |
201 |
gccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41721222 |
gccatgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
41721321 |
T |
|
| Q |
301 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41721322 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
41721421 |
T |
|
| Q |
401 |
cgtga |
405 |
Q |
| |
|
||||| |
|
|
| T |
41721422 |
cgtga |
41721426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 34354622 - 34355026
Alignment:
| Q |
1 |
actgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34354622 |
actgcaaagtgagcagaaaaatgacagcacttctaaagagactgctataatgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccg |
34354721 |
T |
|
| Q |
101 |
gtgcacgaagaacaataaccagatgatgtcaatgatggtgttcgtcgatcaacacgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaa |
200 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34354722 |
atgcacggagaacaagaaccatatgatgtcaatgatggtgttcgtcgatcaacgcgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaa |
34354821 |
T |
|
| Q |
201 |
gccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34354822 |
gccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
34354921 |
T |
|
| Q |
301 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34354922 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
34355021 |
T |
|
| Q |
401 |
cgtga |
405 |
Q |
| |
|
||||| |
|
|
| T |
34355022 |
cgtga |
34355026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 405
Target Start/End: Complemental strand, 7778475 - 7778232
Alignment:
| Q |
161 |
acgcagaaaccgtcttggcaatcagactatgttatgacaagccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgt |
260 |
Q |
| |
|
||||| ||||| |||||| ||||| |||||||||| | || ||| || ||||||||||| |||| |||||||||||||| |||||||| || ||| ||| |
|
|
| T |
7778475 |
acgcaaaaaccatcttggaaatcaaactatgttataatgaggcacaattcatattgtcttctaaccgaagaaggtgaaccttcaacttt-caagagacgt |
7778377 |
T |
|
| Q |
261 |
tgaatggttcggatgcttctcaatggatgacagcaatgcatgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaaggg |
360 |
Q |
| |
|
| || ||| |||||||| ||| ||||| | ||||||||||||| ||| ||| ||||||||| ||||||||||| || |||||||||||| |||| || |
|
|
| T |
7778376 |
taaacagttaaaatgcttcttaatagatgataacaatgcatgaagatatgaaggacttacatagaaacaagacatgtgatcttgttgaactttcaaaagg |
7778277 |
T |
|
| Q |
361 |
tcggaaagccattggaaacaaatgggtatacaagatcaaacgtga |
405 |
Q |
| |
|
|| ||||||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
7778276 |
tcaaaaagccattcgaaacaaatggatatacaagatcaaatgtga |
7778232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 48699526 - 48699122
Alignment:
| Q |
1 |
actgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699526 |
actgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcg |
48699427 |
T |
|
| Q |
101 |
gtgcacgaagaacaataaccagatgatgtcaatgatggtgttcgtcgatcaacacgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaa |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699426 |
gtgcacgaagaacaagaaccagatgatgtcaatgatggtgttcgtcgatcaacgcgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaa |
48699327 |
T |
|
| Q |
201 |
gccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699326 |
gccatgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
48699227 |
T |
|
| Q |
301 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699226 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
48699127 |
T |
|
| Q |
401 |
cgtga |
405 |
Q |
| |
|
||||| |
|
|
| T |
48699126 |
cgtga |
48699122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 42268515 - 42268919
Alignment:
| Q |
1 |
actgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42268515 |
actgcaaagtaagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccg |
42268614 |
T |
|
| Q |
101 |
gtgcacgaagaacaataaccagatgatgtcaatgatggtgttcgtcgatcaacacgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaa |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
42268615 |
gtgcacgaagaacaagaaccagatgatgtcaataatggtgttcgtcgatcaacgcgtcaaacgcagaaaccatcttggcaatcagactatgttatgacga |
42268714 |
T |
|
| Q |
201 |
gccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268715 |
gccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
42268814 |
T |
|
| Q |
301 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268815 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
42268914 |
T |
|
| Q |
401 |
cgtga |
405 |
Q |
| |
|
||||| |
|
|
| T |
42268915 |
cgtga |
42268919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 30947888 - 30947484
Alignment:
| Q |
1 |
actgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30947888 |
actgcaaagtgagcagaaaaatgacagcacttttaaagagactgctattctgcagatagaagaaaaatccaaagaaagtgattcttctgaagctgaatcg |
30947789 |
T |
|
| Q |
101 |
gtgcacgaagaacaataaccagatgatgtcaatgatggtgttcgtcgatcaacacgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaa |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30947788 |
gtgcacgaagaacaagaaccagatgatgtcaataatggtgttcgtcgatcaacgcgtcagacgcagaaaccatcttggcaatcagactatgttatgacgg |
30947689 |
T |
|
| Q |
201 |
gccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
30947688 |
gccacgatgcatattgtcttatagctgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcagatgcttctcaatggatgacagcaataca |
30947589 |
T |
|
| Q |
301 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
400 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30947588 |
tgaagaaatggaggccttacgtaagaacaagacatgggagcttgttgaacttccaaagggtcgaaaagccattggaaacaaatgggtatataagatcaaa |
30947489 |
T |
|
| Q |
401 |
cgtga |
405 |
Q |
| |
|
||||| |
|
|
| T |
30947488 |
cgtga |
30947484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 284 - 402
Target Start/End: Original strand, 2001772 - 2001890
Alignment:
| Q |
284 |
tggatgacagcaatgcatgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaat |
383 |
Q |
| |
|
|||||| ||||||||||| |||||||||| ||||||||||| ||||| | ||||| |||||| ||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
2001772 |
tggatggcagcaatgcataaagaaatggaagccttacatagaaacaaaagttgggaacttgttcaacttcccaagggtcggaaagccatcgggaacaaat |
2001871 |
T |
|
| Q |
384 |
gggtatacaagatcaaacg |
402 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2001872 |
gggtatacaagatcaaacg |
2001890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 9441796 - 9441392
Alignment:
| Q |
1 |
actgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9441796 |
actgcaaagtaagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccg |
9441697 |
T |
|
| Q |
101 |
gtgcacgaagaacaataaccagatgatgtcaatgatggtgttcgtcgatcaacacgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaa |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
9441696 |
gtgcacgaagaacaagaaccagatgatgtcaataatggtgttcgtcgatcaacgcgtcaaacgcagaaaccatcttggcaatcagactatgttatgacga |
9441597 |
T |
|
| Q |
201 |
gccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9441596 |
gccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
9441497 |
T |
|
| Q |
301 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9441496 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
9441397 |
T |
|
| Q |
401 |
cgtga |
405 |
Q |
| |
|
||||| |
|
|
| T |
9441396 |
cgtga |
9441392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 176 - 402
Target Start/End: Complemental strand, 24596021 - 24595795
Alignment:
| Q |
176 |
tggcaatcagactatgttatgacaagccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatg--gttcgga |
273 |
Q |
| |
|
||||| ||||||||||| ||||||| || ||||||||||||||| ||| ||||| || || || ||||| ||||| ||||| |||| | | || || |
|
|
| T |
24596021 |
tggcattcagactatgtaatgacaactcatgatgcatattgtcttttaaaagaagatggggagccatcaacctttcaggaggc--tgaaagaagctcaga |
24595924 |
T |
|
| Q |
274 |
tgcttctcaatggatgacagcaatgcatgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccatt |
373 |
Q |
| |
|
|| ||||| |||||| |||||||||||||||||||||| ||||||||||| ||||| || ||||| |||||| ||||||| ||||||||||||||||| |
|
|
| T |
24595923 |
tgtttctctgtggatggcagcaatgcatgaagaaatggaagccttacatagaaacaaaacttgggaacttgtttaacttcccaagggtcggaaagccatc |
24595824 |
T |
|
| Q |
374 |
ggaaacaaatgggtatacaagatcaaacg |
402 |
Q |
| |
|
|| |||||||||||||||||||||||||| |
|
|
| T |
24595823 |
gggaacaaatgggtatacaagatcaaacg |
24595795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 5820980 - 5820576
Alignment:
| Q |
1 |
actgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5820980 |
actgcaaagtaagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccg |
5820881 |
T |
|
| Q |
101 |
gtgcacgaagaacaataaccagatgatgtcaatgatggtgttcgtcgatcaacacgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaa |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
5820880 |
gtgcacgaagaacaagaaccagatgatgtcaataatggtgttcgtcgatcaacgcgtcaaacgcagaaaccatcttggcaatcagactatgttatgacga |
5820781 |
T |
|
| Q |
201 |
gccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5820780 |
gccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
5820681 |
T |
|
| Q |
301 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5820680 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
5820581 |
T |
|
| Q |
401 |
cgtga |
405 |
Q |
| |
|
||||| |
|
|
| T |
5820580 |
cgtga |
5820576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 2814968 - 2814859
Alignment:
| Q |
1 |
actgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |
|
|
| T |
2814968 |
actgcaaagtgagcagaaaaatgacagcatttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttcagaatcagaatca |
2814869 |
T |
|
| Q |
101 |
gtgcacgaag |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
2814868 |
gtgcacgaag |
2814859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 176 - 402
Target Start/End: Original strand, 42587735 - 42587961
Alignment:
| Q |
176 |
tggcaatcagactatgttatgacaagccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatg--gttcgga |
273 |
Q |
| |
|
||||| ||||||||||| ||||||| || ||||||||||||||| |||| ||||| || || || ||||| ||||| ||||| |||| | | | || |
|
|
| T |
42587735 |
tggcattcagactatgtaatgacaactcatgatgcatattgtcttttaacagaagatggggagccatcaacctttcaggaggc--tgaaagaagctaaga |
42587832 |
T |
|
| Q |
274 |
tgcttctcaatggatgacagcaatgcatgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccatt |
373 |
Q |
| |
|
|| ||||| |||||| |||||||||||||||||||||| ||||||||||| ||||| || ||||| |||||| ||||||| ||||||||||||||||| |
|
|
| T |
42587833 |
tgtttctctgtggatggcagcaatgcatgaagaaatggaagccttacatagaaacaaaacttgggaacttgttcaacttcccaagggtcggaaagccatc |
42587932 |
T |
|
| Q |
374 |
ggaaacaaatgggtatacaagatcaaacg |
402 |
Q |
| |
|
|| ||||||| |||||||||||||||||| |
|
|
| T |
42587933 |
gggaacaaataggtatacaagatcaaacg |
42587961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 828091 - 828495
Alignment:
| Q |
1 |
actgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
828091 |
actgcaaagtaagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccg |
828190 |
T |
|
| Q |
101 |
gtgcacgaagaacaataaccagatgatgtcaatgatggtgttcgtcgatcaacacgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaa |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
828191 |
gtgcacgaagaacaagaaccagatgatgtcaataatggtgttcgtcgatcaacgcgtcagacgcagaaaccatcttggcaatcagactatgttatgacga |
828290 |
T |
|
| Q |
201 |
gccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
828291 |
gccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatgatccagatgcttctcaatggatgacagcaatgca |
828390 |
T |
|
| Q |
301 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
828391 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
828490 |
T |
|
| Q |
401 |
cgtga |
405 |
Q |
| |
|
||||| |
|
|
| T |
828491 |
cgtga |
828495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 137 - 405
Target Start/End: Complemental strand, 13842424 - 13842157
Alignment:
| Q |
137 |
ggtgttcgtcgatcaacacgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaagccacgatgcatattgtcttataactgaagaaggtg |
236 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||||| || | | ||||||||| ||| | | | |||||| |||||||||||||| || ||||||||| || |
|
|
| T |
13842424 |
ggtgttcgtcgatcaatgcgtcagatgcataaaccatcctagtaatcagactctgtcacggcgagccacaatgcatattgtcttctagctgaagaagatg |
13842325 |
T |
|
| Q |
237 |
aaccgtcaacttttcatgaggcgttgaatggttcggatgcttctcaatggatgacagcaatgcatgaagaaatggaggccttacataggaacaagacatg |
336 |
Q |
| |
|
| || | || || ||| |||| ||||||| ||||| |||||||||||||||||| | | ||||||||||||| | ||||||||||| ||||||||| | |
|
|
| T |
13842324 |
agcctttaaattatcaagaggtgttgaattgttcgtatgcttctcaatggatga-aaaagtgcatgaagaaattaaagccttacatagaaacaagacaag |
13842226 |
T |
|
| Q |
337 |
ggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaacgtga |
405 |
Q |
| |
|
|| ||||||||||||| ||||| ||| ||| |||| | |||||||||| |||||||||| ||| |||| |
|
|
| T |
13842225 |
agatcttgttgaacttctaaaggctcgaaaatccatcgaaaacaaatggatatacaagataaaatgtga |
13842157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 6e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 173 - 405
Target Start/End: Complemental strand, 2325127 - 2324895
Alignment:
| Q |
173 |
tcttggcaatcagactatgttatgacaagccacgatgcatattgtcttataactgaagaaggtgaaccgtcaacttttcatgaggcgttgaatggttcgg |
272 |
Q |
| |
|
|||||| |||| |||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||| | |
|
|
| T |
2325127 |
tcttggtaatccgactatgttatgacgagcctcgatgcatatggtcttataactgaagaaggtgaacctttaacttttcaagaggcgttgaacggttcag |
2325028 |
T |
|
| Q |
273 |
atgcttctcaatggatgacagcaatgcatgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccat |
372 |
Q |
| |
|
||| |||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| | |||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
2325027 |
atgtttctcaatggatgacaacaatgcttgaagaaatggaggccttacatagaaacaagataggggaacttgttgaacttccaaagggacggaaagccat |
2324928 |
T |
|
| Q |
373 |
tggaaacaaatgggtatacaagatcaaacgtga |
405 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |
|
|
| T |
2324927 |
tggaaacaaatggatagacaagatcaaacgtga |
2324895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 294 - 405
Target Start/End: Complemental strand, 11927040 - 11926929
Alignment:
| Q |
294 |
caatgcatgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaa |
393 |
Q |
| |
|
||||||||||||| | | ||| |||||| || ||||||||||| |||||||||||||||||||| |||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
11927040 |
caatgcatgaagatacgaaggacttacaaagaaacaagacatgtgagcttgttgaacttccaaaaggtcagaaagccattcgaaacaaatggatatacaa |
11926941 |
T |
|
| Q |
394 |
gatcaaacgtga |
405 |
Q |
| |
|
||||||| |||| |
|
|
| T |
11926940 |
gatcaaatgtga |
11926929 |
T |
|
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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 403
Target Start/End: Original strand, 34972298 - 34972400
Alignment:
| Q |
301 |
tgaagaaatggaggccttacataggaacaagacatgggagcttgttgaacttccaaagggtcggaaagccattggaaacaaatgggtatacaagatcaaa |
400 |
Q |
| |
|
||||||||| || |||||| |||| |||||||||| ||||||||||||||||||||||||| |||| |||| |||||||||||| || |||||||||| |
|
|
| T |
34972298 |
tgaagaaatagaagccttatatagatacaagacatgatagcttgttgaacttccaaagggtcgaaaagtcattagaaacaaatgggcatgcaagatcaaa |
34972397 |
T |
|
| Q |
401 |
cgt |
403 |
Q |
| |
|
||| |
|
|
| T |
34972398 |
cgt |
34972400 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 11927225 - 11927124
Alignment:
| Q |
148 |
atcaacacgtcagacgcagaaaccgtcttggcaatcagactatgttatgacaagccacgatgcatattgtcttataactgaagaaggtgaaccgtcaact |
247 |
Q |
| |
|
||||||| ||| ||||| ||||| |||||| ||||| |||||||||||| || ||| || ||||||||||| |||| |||||||||||||| |||||| |
|
|
| T |
11927225 |
atcaacaactcaaacgcaaaaaccatcttggaaatcaaactatgttatgatgaggcacaattcatattgtcttctaaccgaagaaggtgaaccttcaact |
11927126 |
T |
|
| Q |
248 |
tt |
249 |
Q |
| |
|
|| |
|
|
| T |
11927125 |
tt |
11927124 |
T |
|
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