View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_41 (Length: 403)
Name: NF9361A_low_41
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 12 - 397
Target Start/End: Complemental strand, 21642805 - 21642420
Alignment:
| Q |
12 |
acatcatctttcacaaacatttcatcaaacaccctccgtgcatcatcaaccgcgcgattccaaccatacatatcaatcaacgaacacgaaacaacagtat |
111 |
Q |
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| T |
21642805 |
acatcatctttcacaaacaattcatcaaacaccctccgtgcatcatcaacagcgcgattccaaccatacatatcaatcaacgaacacgaaacaacagtat |
21642706 |
T |
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| Q |
112 |
tccaatcaaacccacgtgttaaaaccatagaatgaaaacatctcccaaggtttacgtcattcaacgtagaacaagctttaataacggaagatagagtaaa |
211 |
Q |
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| T |
21642705 |
tccaatcaaacccacgtgttaaaaccatagaatgaaagcatctcccaaggtttacgtcatttaacgcagaacaagctttgataacagaagatagagtaaa |
21642606 |
T |
|
| Q |
212 |
agcattgggttgaataggaaatgccaacatttcgtagaataaagatatcgactgatgtggctggccggagcgagtgtaaccggagataagtgaagtccat |
311 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
21642605 |
agcattgggttgaacaggaaatgccaacatttcgtagaataaagatatcgattgatgtggcaggtcggagcgagtgtaaccggagataagtgaagtccat |
21642506 |
T |
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| Q |
312 |
gagataacatctttgacgtgaagtgagtcgaagagatgacgggcgtgagataaatgggggccggggtttaatttaaagtaaagagt |
397 |
Q |
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| T |
21642505 |
gagatgacatctttgacgtgaagtgagtcgaagagatgacgggcgtgagataaatgggggccggggtttaatttaaagtaaagagt |
21642420 |
T |
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