View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_43 (Length: 402)
Name: NF9361A_low_43
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 41 - 358
Target Start/End: Original strand, 6350057 - 6350382
Alignment:
| Q |
41 |
catcacaaaaagcaacaattcaattcaacacacgcctcataataaaaacacacacgttcacttttcaaagtcaaggaccacatcccacaactaaaccatg |
140 |
Q |
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| T |
6350057 |
catcacaaaaagtagcaattcaattcaacacacgcctcacaataaaaacacacacgttcacttttcaaagtcaaggaccacatcccacaactaaaccatg |
6350156 |
T |
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| Q |
141 |
aggcacaatatgtctaatttaatttaatnnnnnnnntcattaaaatattagtttaatttaataatacaaagtagttaatggccttc--------tatttc |
232 |
Q |
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| T |
6350157 |
aggcacaatatgtctaatttaatttaataaaaaaaatcattaaaatattagtttaatttaataatacaaagtagttaatggccttctaatcttctatttc |
6350256 |
T |
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| Q |
233 |
tgaaagggattggagaaacttcattcacctatactagtttaaatagaacatgtgccttatgtttttctagacatgctaaaatatcattataaaaaatgaa |
332 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6350257 |
tgaaagggattggagaaacttcattcacctatacttgtttaaatataacaggtgccttatgtttttctagacatgctaaaatatcattataaaaaatgaa |
6350356 |
T |
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| Q |
333 |
aaagtaaataggattagagatcctcc |
358 |
Q |
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| T |
6350357 |
aaagtaaatatgattagagatcctcc |
6350382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 205 - 322
Target Start/End: Original strand, 6335244 - 6335360
Alignment:
| Q |
205 |
tacaaagtagttaatggccttctatttctgaaagggattggagaaacttcattcacctatactagtttaaatagaacatgtgcct--tatgtttttctag |
302 |
Q |
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| T |
6335244 |
tacaaagtagttaatggccttctatttctaaaagggattggagaaacttcattcaccta---tagtttaaatattacatgtgctttatatgtttttcaag |
6335340 |
T |
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| Q |
303 |
acatgctaaaatatcattat |
322 |
Q |
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| T |
6335341 |
acatgctaaaatatccttat |
6335360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 6334598 - 6334679
Alignment:
| Q |
41 |
catcacaaaaagcaacaattcaattcaacacacgcctcataataaaaacacacacgttcacttttcaaagtcaaggaccaca |
122 |
Q |
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|||||||||||| | |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6334598 |
catcacaaaaagtagcaattcaattaaacacacgcctcacaataaaaacacacacgttcacttttcaaagtcaaggcccaca |
6334679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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